Amino acids in sandal (Santalum album L) with special reference to cis-4-hydroxy-l-proline and sym. homospermidine
© Kuttan et al. 2015
Received: 28 July 2015
Accepted: 2 September 2015
Published: 24 September 2015
Sandal (Santalum album L) contains several interesting amino acids and amines which are not seen in other plants. This includes cis-4-hydroxy-l-proline in free form in leaves, flowers and seeds while trans-4-hydroxy-l-proline in bound form. Traces of 3, 4 dehydroproline is also detected in sandal leaves. Biosynthesis of cis-4-hydroxy proline indicates that hydroxylation taken place at proline present in peptidyl form especially bound to glutamic acid and aspartic acid. Pyrrolizidine-2-carboxylic acid an interesting isatin positive heterocyclic compound is also present in sandal leaves. Sandal also contains sym. homospermidine which is not present in any other plants till today. Biosynthesis of sym. homospermidine goes by a unique pathway of putrescine oxidation, Schiff base formation, condensation and reduction. Moreover sandal leaves contain γ-glutamyl derivative of the lachrymatory precursor of onion, γ-glutamyl-S-propenyl cysteine superoxide. This review summarizes the studies on the amino acids in sandal.
KeywordsSandal (Santalum album) Hydroxy prolines sym. Homospermidine Lachrymatory precursor Biosynthetic pathways
Sandal is most probably indigenous to peninsular India, though some authorities feel that it was originally imported from Timor, Indonesia. About 65 % of the world’s sandal wood spreads across Karnataka, India. Sandal wood paste and oil has been extensively used as perfume from time immemorial. The wood contains an essential oil containing santalol and other terpenoid derivatives. Sandal is one of the most important plants used in many medicaments and perfumery shows the unusual presence of several interesting compounds. This includes cis-4-hydroxy-l-proline (Radhakrishnan and Giri 1954) (an optical isomer of trans-4-hydroxy-l-proline present in collagen) which is present in a free state, as well as a bound trans-4-hydroxy-l-proline (Kuttan and Radhakrishnan 1970) present as a soluble form and insoluble form. sym. Homospermidine (Kuttan et al. 1971) an analogue of polyamine spermidine as well as l-γ-glutamyl-S-propenyl cystein sulfoxide (Kuttan et al. 1974a, b) a stereo isomer of lachrymatory precursor present in onion is also reported to be present in sandal leaves. Moreover another isatin positive compound pyrrolizidine 2 carboxylic acid has also been isolated from sandal leaves. Possible presence of precursors of cis-4 hydroxy proline, such as 3, 4 dehydroproline and γ-hydroxy glutamic acid have also been checked in the leaves extract. This review is dedicated to Professor Dr. A. N. Radhakrishnan for his pioneering work in Biochemistry especially on amino acid metabolism.
cis-4-Hydroxyproline in sandal
Proline→3, 4 dehydroproline→cis-4-hydroxy-l-proline.
Proline→3, 4 dehydroproline→4-keto proline→cis-4-hydroxy-l-proline.
cis-4-hydroxy glutamate→cis-hydroxy-glutamic-γ semialdehyde→Δ′ pyrroline-4-hydroxy-2-carboxylate→cis-hydroxyl proline.
γ-Hydroxy ornithine→γ-hydroxy glutamic-γ-semialdehyde→Δ′-pyrroline-4-hydroxy-2-caroxylate→cis-4-hydroxy-l-proline.
Role of 3, 4 dehydroproline in the biosynthesis of cis-4 hydroxy proline
Similarly after incorporation of radioactive proline into the sandal leaves radioactivity could be detected in the position similar to that of 3, 4 dehydroproline. The presence of 3, 4 dehydroproline in the sandal leaves was also found to be seasonal dependent. Upon administration of 3, 4 dehydroproline into sandal leaves this imino acid gets metabolized very fast. Hence 3, 4 dehydroproline in sandal leaves has only a very short half life. Presently it is not known whether 3, 4-dehydroproline is one of the intermediates in the biosynthetic pathway of cis-4-hydroxy-l-proline or a metabolic product produced from either proline or hydroxy proline.
trans-4-hydroxy-l-proline in sandal
The sandal leaves also contained the natural isomer of hydroxyl proline i.e. trans-4-hydroxy-l-proline which has been shown to be present in a bound (associated with a protein) state (Kuttan and Radhakrishnan 1970). This constitutes nearly 4 % of the total hydroxyl proline present in sandal leaves.
Hydroxy proline in bound state was mainly associated with a wall and soluble fraction together constituting nearly 86 % of total bound hydroxyl proline in leaves. Bound hydroxy proline is present only in small amounts in the soluble fraction but is mostly associated with “wall” fraction.
Various extraction procedures showed the heterogeneity of bound proline containing components in sandal. Hot 5 % (W/V trichloroacetic acid extracts about 25 % of hydroxyl proline and M NaOH extracted an additional 25 %. All these fractions had varying ratios of proline:hydroxyl proline, hydroxy proline:sugar and hydroxyl proline:protein.
Using radioactive labeling techniques it was shown that hydroxyl proline in soluble fraction and wall fractions were synthesized from proline. Hydroxylation of proline takes place in the peptide form during ribosomal elongation of the chain. ATP and Mg++ are needed for elongation and ascorbate and Fe++ for hydroxylation. Enzyme responsible is prolyl hydroxylase. Pulse labeling studies indicated that soluble fraction is not a precursor of wall fraction.
Bound hydroxyl proline content in the soluble and in the cell wall fractions was determined in younger and in progressively older leaves. It was seen that trichloroacetic acid soluble bound hydroxyl proline decreased from buds to older leaves. The soluble hydroxyl proline containing protein of sandal leaves has been purified to homogeneity (Mani and Radhakrishnan 1974), by Sephadex G-50 column and further absorption on alumina gel and the protein was purified 17-fold with a recovery of 23 %.
Infiltration studies using radioactive proline
When the 14C-proline was infiltrated into the sandal leaves the radioactivity was found to be associated not only with proline but also with hydroxy proline. The incorporation of proline into the hydroxyproline at various intervals of time such as 2, 6, 24 h were determined. The incorporation of proline to hydroxy proline was initially was low in the beginning reaching a maximum at 6 h and further reduced at 24 h. The radioactivity in hydroxyproline to proline ratio was initially was very low and became almost one at 24 h.
Identification of an intermediate in the biosynthesis of cis 4 hydroxy proline
The nature of the Ehrlich positive material is not known. The following evidences indicated that the Ehrlich positive material is not an artifact of isolation but is involved in the biosynthesis of cis-4-hydroxy-l-proline (a) Ehrlich positive material as well as material in the origin increased after cold proline incorporation (b) when infiltration with 14C proline label could be seen in the origin which was converted to the Ehrlich positive material and to cis-hydroxyl proline (c) during the isolation of the material in the origin loosely bound hydroxyproline could be seen in the chromatogram (d) after proline incorporation 14C hydroxyproline increased in the material present in the origin (e). Ehrlich positive material produced cis-4-hydroxy-l-proline after hydrolysis. The other amino acid that is produced after hydrolysis of the Ehrlich positive material was found to be glutamic acid and aspartic acid.
The inability of other precursors such as glutamic acid and ornithine to produce a significant increase in cis-hydroxyl proline levels in sandal leaves indicates that hydroxyl prolines in the plant is not produced by cyclisation reactions of these five carbon amino acids. Similarly since proline did not directly produce cis-4-hydroxy-l-proline even when its concentration was very high indicates that proline incorporation into cis-4-hydroxy-l-proline may possibly takes place by indirect methods such as peptide synthesis, hydroxylation and cleavage. Other precursors seen as 3, 4, dehydroproline or 4-keto proline may not be involved in this conversion.
Identification of two new amino acids from sandal leaves
200 g of dried sandal leaves powder was extracted with one liter of 75 % methanol and kept overnight. Supernatant was filtered and to the residue 500 ml of 75 % methanol was again added and kept overnight. It was filtered and the residue was extracted again using 500 ml 75 % methanol. All the supernatants were pooled together and concentrated in a boiling water bath to 100 ml. There after, 200 ml of chloroform was added and aqueous layer was collected by centrifugation. The pH of the aqueous layer was adjusted to 1.0 and kept overnight. Precipitate formed was removed next day by centrifugation. The supernatant was passed through a Dowex (50 × 8) H+ column (110 cm × 2 cm). The column was first washed with 500 ml water which was collected as 50 ml fractions (10 numbers). Thereafter the column was washed with 500 ml 0.75 N HCl. 10 ml fractions were collected (50 numbers). Further the column was washed with 500 ml 1.5 N HCl which was collected and stored. 10 µl of the alternate fractions collected with 0.75 N HCl were spotted on Whatman No. 1 paper and unidimensional paper chromatography was done with phenol–KCl–HCl (50:7) buffer system and butanol-acetic acid–water (4:1:1) as solvent system using hydroxyl proline and proline as the standards. The chromatograms were sprayed with 0.4 % ninhydrin in acetone containing 2 % collidine. Another set of chromatograms were sprayed with isatin (0.4 %) in acetone and heated at 70 °C for 10 min. The fractions containing the new amino acids appeared in fraction nos. 16–50. The fractions were pooled and dried in the boiling water bath (Fraction 1 and Fraction II).
Purification of aminoacid in fraction I
The fraction I was made up to 2 ml and streaked on Whatman No. 1 paper and chromatographed in phenol–KCl–HCl buffer pH 2.0. The new amino acid present in this fraction did not have any mobility in this system and hence the material in the origin was cut and eluted with water. The elutes were pooled and concentrated to dryness using a lyophilizer. The lyophilized amino acids are made up to 2 ml and were passed through a Dowex (50 × 8H+) column (30 cm × 1.5 cm). After washing with water the new amino acid was eluted with 1 N ammonia. The ammonia elute was evaporated to dryness using a lyophilizer Yield = 100 mg.
Purification of amino acid in Fraction II
The fraction 16–50 from 0.75 N HCl elute was concentrated to dryness in a boiling water bath and made up to 2 ml. This material was streaked on a Whatman No. 1 paper and chromatographed using butanol-acetic acid–water (4:1:1) with hydroxyl proline and proline as standards. The new amino acid appeared as an isatin positive material above proline. This material was cut out and eluted with water. The pooled elute was concentrated by lyophilization and made up to 2 ml. The fraction was further passed through a Dowex (50 × 8 H+) column (30 cm × 1.5 cm) and the column was washed with water (100 ml) and further eluted with 150 ml 1 N ammonia. The ammonia elute was lyophilized to dryness yield = 126 mg.
Nature of the amino acids
Chromatographic mobility of isolated amino acids
Butanol-acetic acid–water system
Both the amino acids were found to give positive reaction to ninhydrin (purple colour). Aminoacid in Fraction II was also found to give blue colour similar to proline using isatin reagent with almost same sensitivity. However unlike proline which gives yellow color with ninhydrin this material produced purple color.
The purity of the isolated material
The material isolated on the sandal leaves was not completely pure. Aspartic acid was found to be the major contaminating amino acid in fraction I. Fraction II gave two ninhydrin positive materials of which the lower spot was found to be isatin positive. Because of the closely related mobility some amino acids such as tryptophan, phenyl alanine or tyrosine could be a possible contaminant in this fraction.
Identification of isatin positive material
The ninhydrin positive material present in the fraction I was isolated because of its close mobility in paper chromatography with γ-hydroxy glutamate. However further investigation by paper chromatography proved that it may not be γ-hydroxy glutamate.
sym. Homospermidine: a new polyamine from sandal leaves
Quantitation in the leaves was done using small Dowex 50 × 8H+ column. After loading a known quantity of the extracts column was washed with 1 N ammonium hydroxide (10 bed volume) and further with 10 bed volume of peperidine (1 M). Piperidine eluent was concentrated to dryness and quantitated by Rosen’s procedure (Rosen 1957) using leucine was the standard. It was found that homospermidine was found in the leaves at a range of 0.5–1.5 % of the weight of the dried leaves.
Biosynthesis of sym. homospermidine
Biosynthesis of sym. homospermidine was studied using radioactive migration studies. Both arginine and ornithine are good precursors of homospermidine. Arginine appears to be more effective precursor than ornithine. After infiltration of the leaves with [14C] arginine and [14C] ornithine, the ethanolic extracts were subjected to two dimensional paper chromatography and radioautography. With arginine as the precursor the label was found in homospermidine, agmatine, putrescine, ornithine, proline and γ-aminobutyrate. With ornithine as the precursor the label was found in homospermidine, glutamate, proline, citrulline putrescine, γ-aminobutyrate, aspartate and arginine.
Biosynthetic pathway for homospermidine in sandal leaves
In view of the symmetrical nature of the homospermidine molecule it was further considered that both half of the molecule was derived from putrescine. The biosynthesis may then involve a Schiff-base formation between putrescine and γ-aminobuteraldehyde, a metabolite of putrescine. Further reduction of the Schiff base would yield homospermidine. Such a mechanism is supported by the observed incorporation of 3H from the medium into homospermidine, suggesting a nucleotide-dependent reduction. Also in model systems containing γ-aminobuteraldyhyde and putrescine followed by reduction with NaBH4 or Pt/H2, the formation of homospermidine was demonstrated. On the basis of these results a scheme for the biosynthesis of homospermidine in sandal is presented (Fig. 7).
An enzyme catalysing the synthesis of sym. homospermidine from putrescine and NAD+ with concomitant liberation of NH3 was purified 100-fold from Lathyrus sativus (grass pea) seedlings by affinity chromatography on Blue Sepharose. This thiol enzyme had an apparent mol wt. of 75,000 and exhibited Michaelis–Menten kinetics with Km 3.0 Mm for putrescine. The same enzyme activity could also be demonstrated in the crude extracts of sandal (Santalum album) leaves, but with a specific activity 15-fold greater than that in L. sativus seedlings (Srivenugopal and Adiga 1980). Tait (1979) purified an enzyme when synthesize of homospermidine from Rhodopseudomonus viridis. Biosynthetic pathway of homospermidine was similar to that is same as sandal as reported.
Polyamines, putrasines, spermidine and speemine are present in the animal tissues and biological fluids. While putrascine is ubiquitously present in plants higher polyamines are seldom present. In this respect discovery of homospermidine in sandal leaves is highly interesting. Homospermedine in sandal leaves is detected in alcohol and H2O extract and is present in an unconjugated form. Till today no other species of animals, plants, microorganisms have been reported to have sym. homospermidine.
During the routine analysis of the amino acids in sandal using two dimensional chromatography another unknown ninhydrin positive was observed. This compound was an acidic amino acid which is in the amino acid analyser emerged 15 min earlier than trans-4 hydroxyproline. Acidity of this amino acid was exploited in isolating this amino acid in pure form. Chemical hydrolysis of GPCS from sandal leaves yielded glutamic acid and cysteine. Milder acid hydrolysis liberated glutamic acid and indicated the presence of a γ-glutamyl linkage in the peptide, a peptide in which glutamic acid was also N-terminal as indicated by the DNP assay. Acid and enzymatic hydrolysis combined with proton magnetic resonance, circular dichorism and IR spectrometry established the structure of the unknown amino acid and γ-glutamyl S-propenyl cysteine, sulfoxide (GPCS).
Quantitation in leaves
The leaves from young plants contained only traces while much larger amounts were found in older plants. The amino acid analyzer permitted a quantitative estimation of the peptide in the plant leaves from which the peptide was isolated. The peptide constituted nearly 0.5 % of the dried leaves. The γ-l-glutamyl peptide of s-(1-propenyl)-l-cysteine sulfoxide is the principal γ-glutamyl peptide of onion (Allium cepa). Fresh onions contain nearly 0.2 % by weight while dehydrated onions contained 0.15 % of GPCS. Lesser amounts of γ-glutamyl-S-(2-carboxylpropyl) cysteine and S-methyl cysteine γ-glutamyl peptides of S-alkylated cysteine are also found in garlic (Allium sativum) and chives (Allium shoenoprasum). Cysteine derivatives e.g. S-methyl, S-propyl-and S-(1-propyl-cysteine, occur in onion as both the thioester and sulfoxide form (Sugii et al. 1963). S-Allyl cysteine as the thioester in onion and the sulfoxide in garlic but the γ-glutamyl peptides of these cysteine derivatives are rarely found in the oxidized state.
The proton magnetic spectrum of GPCS from sandal provides unambiguous evidence that the alkyl group attached to cysteine is an S (1 propenyl) group with trans configuration. Most of the optically active sulfoxides which have been isolated from natural sources and whose sulfoxide configurations have been determined are of the S configuration (Lucas and Levenbook 1966). The single exception seems to be the class of isothiocyanate sulfoxides and suforaphene found in mustard oil. The various γ-glutamyl-peptides including GPCS disappear from the bulbs of sprouting onion and garlic and these may therefore function as a nitrogen reserves. No other role has apparently been proposed for these unusual peptides. The occurrence of GPCS in a higher plants unrelated to the Allium genus is very rare as is the finding that the peptide concentration is greater in mature plants than in young plants.
Role of hydroxyproline and sym. homospermidine in sandal
trans-4-hydroxyproline is a major amino acid in collagen in which it is present nearly 10 % of the total amino acids. It produces the tensile strength of the collagen. In plants trans 4-hydroxyproline is present as a part of the cell wall protein and is helpful in the cell wall extension. No specific role of cis-4-hydroxyproline has been attributed in plants or animal kingdom. Incorporation of cis-4-hydroxy proline by prolyl S-RNA has been reported and collagen incorporated with cis-4-hydroxyproline has been reported to be less stable and hence used in reducing fibrosis. However no physiological role of cis-4-hydroxyproline has been reported in sandal which in fact has trans-4-hydroxyproline in bound form.
Similarly there is no role of sym. homospermidine has been reported in plants. Spermine and spermidine present in animal kingdom has been reported to have a stabilizing effect on DNA during replication. Both these polyamines are not present in plants. Presence of sym. homospermidine in sandal is hence an isolated incidence. However no physiological role can be attributed expecting its catonic role. Sandal is a root parasite and hence the presence of sym. homospermidine may have a role as a catonic during its early stages of growth.
At present no specific use of these compounds has been reported in any disease condition including cancer excepting in reducing fibrosis as discussed earlier.
List of amino acids and amines isolated from sandal
Amino acid (reproductive phase)
Cis-hydroxyl proline (free)
Trans-4-hydroxy proline (bound)
3, 4 dehydroproline
γ-Glutamyl cis-4-hydroxy proline
β-Aspartyl cis-4-hydroxy proline
γ-Glutamyl-S-propenyl cysteine sulfoxide
All the authors have equally contributed to the manuscript. Present work was done under the guidance of Dr. RK. Dr. BP did all the table work given in the manuscript. PPB, understood the concept and wrote the manuscript in the present form. All authors read and approved the final manuscript.
We acknowledge the Director, Amala Cancer Research Centre, Amala Nagar, Thrissur, for all the support during the study.
Compliance with ethical guidelines
Competing interests The authors declare that they have no competing interests.
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- Fischer E (1902) Über eine neue Aminosäure aus Leim. Chem Ber 35:2660–2665View ArticleGoogle Scholar
- Kuttan R, Radhakrishnan AN (1970) The biosynthesis of cis-4-hydroxy-l-proline in sandal (Santalum album L.). Biochem J 117:1015–1017View ArticleGoogle Scholar
- Kuttan R, Radhakrishnan AN, Spande T, Witkop B (1971) sym-Homospermidine, a naturally occurring polyamine. Biochemistry 10:361–365View ArticleGoogle Scholar
- Kuttan R, Nair GN, Radhakrishnan AN, Spande T, Yeh HJ, Witkop B (1974a) The isolation and characterization of γ-l-Glutamyl-S-(trans-1-propenyl)-l-cysteine sulfoxide from sandal (Santalum album L) an interesting occurrence of sulfoxide diasterioisomers in nature. Biochemistry 113:4394View ArticleGoogle Scholar
- Kuttan R, Pattabhiaman KSV, Radhakrishnan AN (1974b) Possible chemotaxonomic significance of the occurrence of cis-4-hydroxy-l-proline in Santalaceae. Phytochemistry 13:453–454View ArticleGoogle Scholar
- Lamport DTA (1965) The protein components of primary cell walls. Adv Bot Res 2:151View ArticleGoogle Scholar
- Lucas F, Levenbook (1966) The isolation of L (+) methionine sulphoxide from the blowfly Phormia regina Meigen. Biochem J 100:473View ArticleGoogle Scholar
- Mani UV, Radhakrishnan AN (1974) Isolation and characterization of a hydroxyl proline containing protein from soluble extracts of the leaves of sandal (Santalum album L.). Biochem J 141:147–153View ArticleGoogle Scholar
- Radhakrishnan AN, Giri KV (1954) The isolation of allohydroxy-l-proline from sandal (Santalum album L.). Biochem J 58:57–61View ArticleGoogle Scholar
- Rosen H (1957) A modified ninhydrin colorimetric analysis for aminoacids. Arch Biochem Biophys 67:10–15View ArticleGoogle Scholar
- Srivenugopal S, Adiga PR (1980) Enzyme synthesis of sym-homospermidine in Lathyrus Sativus (grass pea) seedlings. Biochem J 190:461–464View ArticleGoogle Scholar
- Sugii M, Suzuki T, Nagasawa S (1963) Biosynthesis of S-methyl-l-cysteine and S-methyl-l-cysteine sulfoxide from methionine in garlic. Chem Pharm Bull 11:548View ArticleGoogle Scholar
- Tait GH (1979) The formation of homospermidine by an enzyme from Rhodopseudomonas viridis (proceedings). Biochem Soc Trans 7:199–201View ArticleGoogle Scholar
- Virtanen AI, Matikkala EJ (1961) γ-Glutamyl peptides from onions (2). Suom Kemistilehti B 34:84Google Scholar