Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402
Article
CAS
PubMed
PubMed Central
Google Scholar
Baird NA, Etter PD, Atwood TS, Currey MC, Shiver AL, Lewis ZA, Selker EU, Cresko WA, Johnson EA (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3:e3376
Article
ADS
PubMed
PubMed Central
Google Scholar
Bon M (1987) The mushrooms and toadstools of Britain and North-western Europe. Hodder & Stoughton, London
Google Scholar
Bourgeois YX, Lhuillier E, Cézard T, Bertrand JA, Delahaie B, Cornuault J, Duval T, Bouchez O, Milá B, Thébaud C (2013) Mass production of SNP markers in a nonmodel passerine bird through RAD sequencing and contig mapping to the zebra finch genome. Mol Ecol Resour 13:899–907
Article
CAS
PubMed
Google Scholar
Brumbfield RT, Beerli P, Nickerson DA, Edwards SV (2003) The utility of single uncleotide polymorphisms in inferences of population history. Trends Ecol Evol 18:249–256
Article
Google Scholar
Catchen JM, Amores A, Hohenlohe P, Cresko W, Postlethwait JH (2011) Stacks: building and genotyping Loci de novo from short-read sequences. G3 1:171–182
Article
CAS
PubMed
PubMed Central
Google Scholar
Dai YC, Zhou LW, Yang ZL, Wen HA, Bau T, Li TH (2010) A revised checklist of edible fungi in China. Mycosystema 29:1–29 (in Chinese)
Google Scholar
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
CAS
Google Scholar
Hansen L, Knudsen H (1992) Nordic macromycetes. Polyporales, Boletales, Agaricales, Russulales, vol 2. Nordsvamp, Copenhagen
Google Scholar
Heinzelmann R, Rigling D, Prospero S (2012) Population genetics of the wood-rotting basidiomycete Armillaria cepistipes in a fragmented forest landscape. Fungal Biol 116:985–994
Article
PubMed
Google Scholar
Kirk PM, Cannon PF, Minter DW, Stalpers JA (2008) Ainsworth & Bisby’s dictionary of the fungi, 10th edn. CAB International, Wallingford
Google Scholar
Lamer JT, Sass GG, Boone JQ, Arbieva ZH, Green SJ, Epifanio JM (2014) Restriction site-associated DNA sequencing generates high-quality single nucleotide polymorphisms for assessing hybridization between bighead and silver carp in the United States and China. Mol Ecol Resour 14:79–86
Article
CAS
PubMed
Google Scholar
Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, Chichester, pp 115–175
Google Scholar
Leboldus JM, Kinzer K, Richards J, Ya Z, Yan C, Friesen TL, Brueggeman R (2015) Genotype-by-sequencing of the plant-pathogenic fungi Pyrenophora teres and Sphaerulina musiva utilizing ion torrent sequence technology. Mol Plant Pathol 16:623–632
Article
CAS
PubMed
Google Scholar
Mao XL (2000) The macrofungi in China. Henan Science Technology Press, Zhengzhou (in Chinese)
Google Scholar
Miller MR, Dunham JP, Amores A, Cresko WA, Johnson EA (2007) Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers. Genome Res 17:240–248
Article
CAS
PubMed
PubMed Central
Google Scholar
Moncalvo JM, Vilgalys R, Redhead SA, Johnson JE, James TY et al (2002) One hundred and seventeen clades of euagarics. Mol Phylogenet Evol 23:357–400
Article
CAS
PubMed
Google Scholar
Singer R (1986) The Agaricales in modern taxonomy, 4th edn. Koeltz Scientific Books, Koenigstein
Google Scholar
Stott K, Desmerger C, Holford P (2005) Relationship among Lepista species determined by CAPS and RAPD. Mycol Res 109:205–211
Article
CAS
PubMed
Google Scholar
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876–4882
Article
Google Scholar
van Tassell CP, Smith TP, Matukumalli LK, Taylor JF, Schnabel RD, Lawley CT, Haudenschild CD, Moore SS, Warren WC, Sonstegard TS (2008) SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nat Methods 5:247–252
Article
PubMed
Google Scholar
Wang XQ, Zhao L, Eaton DAR, Li DZ, Guo ZH (2013) Identification of SNP markers for inferring phylogeny in temperate bamboos (Poaceae: Bambusoideae) using RAD sequencing. Mol Ecol Resour 13:938–945
Article
CAS
PubMed
Google Scholar
Wang YK, Hu Y, Zhang TZ (2014) Current status and perspective of RAD-seq in genomic research. Hereditas 36:41–49
PubMed
Google Scholar
White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes from phylogenetics. In: Innes MA, Gelfand DH, Sninsky JS, White TJ (eds) PCR protocols: methods and applications. Academic Press, London, pp 315–322
Google Scholar
Wilson AW, Wickett NJ, Grabowski P, Fant J, Borevitz J, Mueller GM (2015) Examining the efficacy of a genotyping-by-sequencing technique for population genetic analysis of the mushroom Laccaria bicolor and evaluating whether a reference genome is necessary to assess homology. Mycologia 107:217–226
Article
PubMed
Google Scholar
Xiao B, Tan Y, Long N, Chen X, Tong Z, Dong Y, Li Y (2015) SNP-based genetic linkage map of tobacco (Nicotiana tabacum L.) using next-generation RAD sequencing. J Biol Res 22:11
Google Scholar
Xu JP, Guo H, Yang ZL (2007) Single nucleotide polymorphisms in the ectomycorrhizal mushroom Tricholoma matsutake. Microbiology 153:2002–2012
Article
CAS
PubMed
Google Scholar
Yu XD, Lv SX, Ma D, Li FF, Lin Y, Zhang L (2014) Two new species of Melanoleuca (Agaricales, Basidiomycota) from northeastern China, supported by morphological and molecular data. Mycoscience 55:456–461
Article
Google Scholar
Yu S, Chu W, Zhang L, Han H, Zhao R, Wu W, Zhu J, Dodson MV, Wei W, Liu H, Chen J (2015) Identification of laying-related SNP markers in geese using RAD sequencing. PLoS One 10:e0131572
Article
PubMed
PubMed Central
Google Scholar
Zhao J, Jian J, Liu G, Wang J, Lin M, Ming Y, Liu Z, Chen Y, Liu X, Liu M (2014) Rapid SNP discovery and a RAD-based high-density linkage map in jujube (Ziziphus Mill.). PLoS One 9:e109850
Article
ADS
PubMed
PubMed Central
Google Scholar