Table 4 Transferability/polymorphism of P. pubescens FL-cDNA-derived SSR markers across species and genera in the Bambusoideae subfamily
Types of EST-SSR (number) | Intra-genus (Phyllostachys) | Inter-genus within substribe (Shibataeeae) | Inter-substribe | Average | ||||
|---|---|---|---|---|---|---|---|---|
Melocanninae | Bambusinae | Chusqueeae | Arundinarieae | Guaduinae | ||||
5′-UTR (41) | 85.8%/81.4% | 69.2%/91.3% | 42.7%/93.6% | 35.5%/94.4% | 41.5%/88.2% | 78.1%/91.4% | 29.3%/90.9% | 63.4%/90.7% |
ORF (18) | 80.6%/71.3% | 70.1%/91.0% | 58.3%/97.7% | 57.1%/95.7% | 61.1%/90.9% | 75.6%/89.1% | 55.6%/95.8% | 69.1%/89.4% |
3′-UTR (9) | 75.9%/86.6% | 72.2%/91.7% | 41.7%/95.0% | 46.0%/96.4% | 22.2%/100.0% | 70.9%/86.9% | 33.3%/100.0% | 61.8%/91.4% |
Average | 83.1%/79.4% | 69.9%/91.3% | 46.7%/94.9% | 42.6%/95.0% | 44.1%/90.5% | 76.5%/90.2% | 36.8%/93.4% | Â |