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Table 2 List of rice nutrient traits associated with different QTLs (>3.0 LOD) mapped in different rice population

From: Rice grain nutritional traits and their enhancement using relevant genes and QTLs through advanced approaches

S. no

Grain traits

Chr

QTLs

Markers

Type

Peak marker

Populations

References

1

PC

1

qPr1

RM493-RM562

RILs

RM493-RM562

Zhenshan97B/Delong 208

Zhong et al. (2011)

2

PC

1

qPC1.1

1008-RM575

DHs

 

Samgang/Nagdong

Qin et al. (2009)

3

MAC-P

1

qP.1

RM3411

LT/TL-RILs

 

TeQing/Lemont

Zhang et al. (2014)

4

MAC-K

1

qK.1

RM5501

LT/TL-RILs

 

Lemont/TeQing

Zhang et al. 2014

5

PC

1

qPC1

RM472-RM104

RILs

 

Zhenshan97/Nanyangzhan

Peng et al. (2014)

6

AAC

1

qAa1

RM493-RM562

RILs

 

Zhenshan97B/Delong 208

Zhong et al. (2011)

7

MAC-P

1

qP.1

RM495

LT/TL-RILs

 

Lemont/TeQing

Zhang et al. (2014)

8

MAC-Cd

1

qCd.1

RM6840

LT-RILs

   

9

Zn

1

qZn.1

RM34-RM237

DHs

 

IR64/Azucena

James et al. (2007)

10

Mn

1

qMn.1

RM243-RM312

DHs

   

11

MAC-Co

1

qCo.1

RM490

LT/TL-RILs

 

Lemont/TeQing

Zhang et al. (2014)

12

MAC-Ca

1

qCa1-1

RM6480

ILs

 

O. rufipogon/Teqing

Garcia-Oliveira et al. (2008)

13

MAC-P

1

qP1-1

RM212

ILs

   

14

Fe

1

qFe1.1

RM243-RM488

RILs

 

Madhukar/Swarna

Anuradha et al. (2012)

15

Fe

1

qFe1.2

RM488-RM490

RILs

   

16

AAC-Asp/Thr/Glu/Gly/Ala/Cys/Tyr/Pro/Eaa/total

1

qAA.1

RM472-RM104

RILs

RM472

Zhenshan97/Nanyangzhan

Wang et al. (2008)

17

Fe

1

qFe.1

RM259-RM243

RILs

RM259-RM243

Zhenshan 97/Minghui 63

Kaiyang et al. (2008)

18

MIC-Fe

2

qFe2-1

RM6641

ILs

 

O. rufipogon/Teqing

Garcia-Oliveira et al. (2008)

19

PC

2

qPC-2

RM5897-RM6247

RILs

 

Chuan7/Nanyanghan

Lou et al. (2009)

20

MIC-Cu

2

qCu.2

RM6378

LT/TL-RILs

 

Lemont/TeQing

Zhang et al. (2014)

21

MAC-Sr

2

qSr.2

RM3688

LT-RILs

   

22

Fe

2

qFe.2

RM53-RM300

DHs

RM53-RM300

IR64/Azucena

James et al. (2007)

23

AAC-His

2

qAA.2

RM324-RM301

RILs

RM301

Zhenshan97/Nanyangzhan

Wang et al. (2008)

24

AAC-Val/Ile/Leu/His/Phe

2

qAA.2

RM322-RM521

RILs

RM521

  

25

PC

2

qLip-2

RM5619-RM1211

DHs

 

Cheongcheong/Nagdong

Yun et al. (2014)

26

PC

2

qPro-2

RM12532-RM555

DHs

 

Cheongcheong/Nagdong

Lee et al. (2014)

27

MIC-Fe

2

qFe.2

RM452

LT/TL-RILs

 

Lemont/TeQing

Zhang et al. (2014)

28

MIC-Mn

2

qMn2-1

RM6367

ILs

 

O. rufipogon/Teqing

Garcia-Oliveira et al. (2008)

29

MAC-S

2

qS.2

RM266

LT-RILs

 

Lemont/TeQing

Zhang et al. (2014)

30

MAC-Ca

3

qCa.3

RM5626-RM16

LT/TL-RILs

   

31

MAC-Rb

3

qRb.3

RM489

LT-RILs

   

32

AAC-Tyr

3

qAA.3

RM520-RM468

RILs

RM520

Zhenshan97/Nanyangzhan

Wang et al. (2008)

33

MAC-Mg

3

qMg3-1

RM5488

ILs

 

O. rufipogon/Teqing

Garcia-Oliveira et al. (2008)

34

Ca

3

qCa.3.

RM200-RM227

RILs

 

Zhenshan 97/Minghui 63

Kaiyang et al. (2008)

35

PC

3

qPC-3

RM251-RM282

RILs

 

Xieqingzao B/Milyang

Yu et al. (2009)

36

Zn

3

qZn3.1

RM7-RM517

RILs

 

Madhukar × Swarna

Anuradha et al. (2012)

37

PC

3

qPC-3

RM251-RM282

RILs

 

Xieqingzao B/Milyang

Yu et al. (2009)

38

Mn

3

qMn.3

RM227-R1925

RILs

 

Zhenshan 97/Minghui 63

Kaiyang et al. (2008)

39

Cu

3

qCu.1

R1925-RM148

RILs

R1925-RM148

  

40

AAC-Thr/Gly/His/Arg

4

qAA.4

RM348-RM131

RILs

RM131

Zhenshan97/Nanyangzhan

Wang et al. (2008)

41

CPB

4

qcpb4

E12M61.256

RILs

 

Cypress/Panda

Kepiro et al. (2008)

42

CPH

4

qcph4

E12M61.256

RILs

   

43

Cu

5

qCu.5

C1447-RM31

RILs

 

Zhenshan 97/Minghui 63

Kaiyang et al. (2008)

44

PA

5

qPA.5

RM305-RM178

DHs

 

IR64/Azucena

James et al. (2007)

45

FC

5

qFC-5

RG480-RM274

RILs

 

Xieqingzao B/Milyang

Yu et al. (2009)

46

Fe

5

qFe5.1

RM574-RM122

RILs

 

Madhukar/Swarna

Anuradha et al. (2012)

47

MAC-Ca

5

qCa5-1

RM598

ILs

 

O. rufipogon/Teqing

Garcia-Oliveira et al. (2008)

48

MIC-Zn

5

 

RM421

LT/TL-RILs

 

Lemont/TeQing

Zhang et al. (2014)

49

LC

6

qLIp-6

RM586-RM1163

DHs

 

Cheongcheong/Nagdong

Yun et al. (2014)

50

PC

6

qPC-6

RM190-RZ516

RILs

RM190-RZ516

Xieqingzao B/Milyang

Yu et al. (2009)

51

FC

6

qFC-6

RM190-RZ516

RILs

RM190-RZ516

Xieqingzao B/Milyang

Yu et al. (2009)

52

MIC-Cu

6

qCu6-1

RM204

ILs

 

O. rufipogon/Teqing

Garcia-Oliveira et al. (2008)

53

Zn

6

qZn.6

RZ398-RM204

RILs

 

Zhenshan 97/Minghui 63

Kaiyang et al. (2008)

54

PC

6

qPC-6

RM190-RZ516

RILs

 

Xieqingzao B/Milyang

Yu et al. (2009)

55

MAC-Mg

6

qMg.6

OSR 21

LT/TL-RILs

 

Lemont/TeQing

Zhang et al. (2014)

56

PC

7

qPc7

RM270-C751

DHs

 

Yuefu/IRAT109

Yongmei et al. (2007)

57

MIC-Mn

7

qMn.7

RM214

LT/TL-RILs

 

Lemont/TeQing

Zhang et al. (2014)

58

AAC-Pro/Gly/Met/Arg

7

qAA.7

RM125-RM214

RILs

RM214

Zhenshan97/Nanyangzhan

Wang et al. (2008)

59

Zn

7

qZn7.3

RM501-OsZip2

RILs

 

Madhukar/Swarna

Anuradha et al. (2012)

60

Fe

7

qFe7.1

RM234-RM248

RILs

   

61

MAC-P

7

qP.7

RM70-RM172

DHs

 

IR64/Azucena

James et al. (2007)

62

PC

7

qPC.1

R1245-RM234

RILs

 

Zhenshan97/Minghui 63

Tan et al. (2001)

63

PC

7

qPr7

RM445-RM418

RILs

 

Zhenshan97B/Delong 208

Zhong et al. (2011)

64

MIC-Zn

8

qZn8-1

RM152

ILs

 

O. rufipogon/Teqing

Garcia-Oliveira et al. (2008)

65

AAC-Tyr

8

qAA.8

RM137-RM556

RILs

RM556

Zhenshan97/Nanyangzhan

Wang et al. (2008)

66

AAC-Cys

8

qAA.8

RM447-RM458

RILs

RM447

  

67

MAC-K

8

qK8-1

RM3572

ILs

 

O. rufipogon/Teqing

Garcia-Oliveira et al. (2008)

68

Zn

8

qZn.8

RM25-R1629

RILs

 

Zhenshan 97/Minghui 63

Kaiyang et al. (2008)

69

Cu

8

qCu.8

RM201-C472

RILs

   

70

Fe

8

qFe.8

RM137-RM325A

DHs

 

IR64/Azucena

James et al. (2007)

71

AAC

9

qAa9

RM328-RM107

RILs

 

Zhenshan97B/Delong 208

Zhong et al. (2011)

72

MAC-P

9

qP9-1

RM201

ILs

 

O. rufipogon/Teqing

Garcia-Oliveira et al. (2008)

73

MAC-Mg

10

qMg.10

RM467

LT-RILs

 

Lemont/TeQing

Zhang et al. (2014)

74

AAC-Cys/Leu/Ile/Phe

10

qAA.10

RM467-RM271

RILs

RM271

Zhenshan97/Nanyangzhan

Wang et al. (2008)

75

PC

10

qPC-10

RM184-RM3229B

RILs

 

Xieqingzao B/Milyang

Yu et al. (2009)

76

PC

10

qPro-10

RM24934-RM25128

DHs

RM24934

Cheongcheong/Nagdong

Yun et al. (2014)

77

MAC-Mg

11

qMg.11

RM332

LT/TL-RILs

 

Lemont/TeQing

Zhang et al. (2014)

78

MIC-Cu

11

qCu.11

RM167

LT-RILs

   

79

PC

11

qPC1.11

1027-RM287

DHs

RM287

Samgang and Nagdong

Qin et al. (2009)

80

Fe

11

qFe.11

RZ536-TEL3

RILs

 

Zhenshan 97/Minghui 63

Kaiyang et al. (2008)

81

PC

11

qPC1.11

RM287-RM26755

DHs

RM287

Samgang and Nagdong

Qin et al. (2009)

82

PA

12

qPA.12

RM247-RM179

DHs

 

IR64/Azucena

James et al. (2007)

83

Fe

12

qFe.12

RM270-RM17

DHs

   

84

Zn

12

qZn.12

RM235-RM17

DHs

   

85

Fe

12

qFe12.2

RM260-RM7102

RILs

 

Madhukar/Swarna

Anuradha et al. (2012)

86

Fe

12

qFe12.1

RM17-RM260

RILs

   

87

Zn

12

qZn12.2

RM260-RM7102

RILs

   
  1. RB rice bran (%), NF nutrition factors, PC protein content, PA phytic acid, AAC amino acid content, CPB crude protein brown rice, CPH crude protein head rice, MIC micro-element, MAC macro-element, LC lipid content, FC fat content