Table 6 Large indels identified among E. japonica, P. pyrifolia and P. persica
From: Complete plastid genome of Eriobotrya japonica (Thunb.) Lindl and comparative analysis in Rosaceae
Type | Eriobotrya vs Pyrus | Eriobotrya vs Prunus | ||||
|---|---|---|---|---|---|---|
Location | Size (bp) | Repeat motifs | Location | Size (bp) | Repeat motifs | |
Deletion | rps16-trnQ-UUG | 182 | polyA | rps16-trnQ-UUG | 151 | Â |
trnR-UCU-atpA | 417 | AAT | trnR-UCU-atpA | 40 | Â | |
trnT-GGU-psbD | 54 | Â | trnS-UGA-psbZ | 58 | Â | |
psaA-ycf3 | 52 | polyA | ndhC-trnV-UAC | 48 | Â | |
ndhC-trnV-UAC | 56 | Â | ndhC-trnV-UAC | 44 | Â | |
ndhC-trnV-UAC | 48 | polyT | trnM-CAU-atpE | 45 | TTTTG | |
rpl2-trnH-GUG | 50 | Â | ccsA-ndhD | 50 | AA | |
| Â | Â | Â | rpl2-trnH-GUG | 96 | TA | |
Insertion | petN-psbM | 79 | TTCG | rps16-trnQ-UUG | 138 | Â |
| Â | trnT-UGU-trnL-UAA | 42 | CTCAAATATATGTTTATCAAT | trnS-GCU-trnG-GCC | 151 | Â |
| Â | rpl32-trnL-UAG | 69 | Â | rpoB-trnC-GCA | 47 | Â |
| Â | accD-psaI | 129 | AA | rpoB-trnC-GCA | 124 | Â |
| Â | psbZ-trnG-GCC | 148 | Â | |||
| Â | rps4-trnT-UGU | 48 | Â | |||
| Â | trnT-UGU-trnL-UAA | 42 | Â | |||
| Â | trnT-UGU-trnL-UAA | 78 | Â | |||
| Â | rpl33-rps18 | 61 | TTTAT | |||
| Â | rps18-rpl20 | 146 | Â | |||
| Â | ndhF-rpl32 | 191 | AATTT | |||
| Â | rpl32-trnL-UAG | 59 | Â | |||