Identification, characterization and phylogenetic analysis of antifungal Trichoderma from tomato rhizosphere

Rai, Shalini; Kashyap, Prem Lal; Kumar, Sudheer; Srivastava, Alok Kumar; Ramteke, Pramod W.

doi:10.1186/s40064-016-3657-4

SpringerPlus

Table 1 Identification, origin, NCBI Genebank accession numbers, cell wall-degrading enzymes and antagonistic effect of Trichoderma isolates from tomato rhizosphere against fungal plant pathogens

From: Identification, characterization and phylogenetic analysis of antifungal Trichoderma from tomato rhizosphere

Code	Isolate (s)	Region	GenBank accession		Cell wall-degrading enzymes		Mycelia inhibition over control (%)
Code	Isolate (s)	Region	EF-1α	ERG1	Chitinase^x	β-1,3 glucanase^y	FOL	AA	CG	RS
UNT60	Trichoderma harzianum	U.S. Nagar, Uttarakhand	KF360991	KT989041	*40.00 ± 1.42^h	83.67 ± 1.95ⁱ	58.54 ± 2.41 ^g	58.89 ± 2.14ⁱ	59.80 ± 1.88 ^g	53.30 ± 1.99 ^g
UNT64	T. harzianum	U.S. Nagar, Uttarakhand	KF360992	KT989042	69.00 ± 3.54^b	55.60 ± 0.85^l	62.45 ± 1.56^f	61.50 ± 1.91^h	64.50 ± 2.11^cd	62.78 ± 1.88^bcd
UNT68	T. harzianum	U.S. Nagar, Uttarakhand	KF360993	KT989043	76.56 ± 3.95^a	90.56 ± 0.88^g	77.94 ± 2.21^a	79.47 ± 1.88^a	73.94 ± 1.88^a	69.23 ± 1.35^a
NAT69	T. harzianum	Nanital, Uttarakhand	KF360994	KT989044	53.33 ± 1.44^e	53.33 ± 0.55ⁿ	57.65 ± 1.12^g	53.98 ± 1.34^j	59.50 ± 1.77^g	54.80 ± 1.66^g
NAT70	T. harzianum	Nanital, Uttarakhand	KF360995	KT989045	37.00 ± 1.20ⁱ	137.42 ± 0.65^e	62.34 ± 1.21^f	62.50 ± 1.99^gh	60.89 ± 1.55^fg	62.79 ± 1.64^bcd
ALT73	T. harzianum	Almora, Uttarakhand	KF360996	KT989046	49.67 ± 2.01^f	47.67 ± 0.44^p	65.78 ± 1.54^e	53.68 ± 1.86^j	64.70 ± 1.66^cd	63.65 ± 1.94^b
DET89	T. harzianum	Dehradun, Uttarakhand	KF360997	KT989047	67.00 ± 3.93^b	91.66 ± 1.99^g	61.98 ± 1.34^f	67.87 ± 1.54^d	62.56 ± 1.35^e	58.83 ± 1.51^e
DET94	T. harzianum	Dehradun, Uttarakhand	KF360998	KT989048	69.00 ± 4.10^b	171.66 ± 1.01^b	74.35 ± 1.14^b	65.50 ± 1.99^e	68.89 ± 2.01^b	67.89 ± 1.35^a
HAT96	T. harzianum	Haridwar, Uttarakhand	KF360999	KT989049	73.60 ± 3.35^a	63.26 ± 0.97¹	68.95 ± 1.21^d	63.45 ± 1.35 ^fg	60.54 ± 1.35^fg	61.11 ± 1.91^cd
UNT38	T. koningii	U.S. Nagar, Uttarakhand	KF361001	KT989051	74.60 ± 3.55^a	134.61 ± 1.06^f	70.73 ± 1.12^c	69.80 ± 1.36^c	68.90 ± 1.55^b	64.78 ± 1.35^b
UNS63	T. koningii	U.S. Nagar, Uttarakhand	KF361002	KT989052	39.00 ± 1.99^h	89.33 ± 1.04^h	52.98 ± 1.33ⁱ	56.89 ± 1.25ⁱ	56.90 ± 1.97^h	59.80 ± 2.11^de
UNT13	T. asperellum	U.S. Nagar, Uttarakhand	KF361003	KT989053	56.56 ± 2.44^d	51.26 ± 0.95^o	55.80 ± 1.21^h	61.89 ± 1.44^h	62.80 ± 1.25^e	59.80 ± 1.87^de
UNT70	T. asperellum	U.S. Nagar, Uttarakhand	KF361004	KT989054	54.33 ± 1.66^e	34.33 ± 0.65^q	53.90 ± 1.44ⁱ	59.98 ± 0.99^h	60.70 ± 1.35^fg	62.89 ± 1.76^bcd
UNS28	T. virens	U.S. Nagar, Uttarakhand	KF361005	KT989055	61.00 ± 1.32^c	78.35 ± 0.78^j	64.30 ± 1.31^e	67.50 ± 1.34^d	65.80 ± 1.97^c	60.80 ± 1.54^cde
UNS30	T. virens	U.S. Nagar, Uttarakhand	KF361006	KT989056	73.67 ± 2.12^a	175.1 ± 1.20^a	70.89 ± 1.21^c	75.60 ± 1.65^b	65.70 ± 1.54^c	64.58 ± 1.62^b
NAS46	T. virens	Nanital, Uttarakhand	KF361007	KT989057	44.00 ± 1.19^g	54.22 ± 0.55^mn	65.80 ± 1.33^e	60.80 ± 1.21^hi	59.80 ± 1.35^g	57.50 ± 1.31^ef
ALS47	T. virens	Almora, Uttarakhand	KF361008	KT989058	57.00 ± 2.37^d	72.52 ± 0.72^k	69.00 ± 1.54^d	65.78 ± 1.35^e	61.90 ± 1.67^e	62.80 ± 1.15^bc
UNT09	T. viride	U.S. Nagar, Uttarakhand	KF361011	KT989061	59.90 ± 1.15^c	56.55 ± 0.96^l	67.83 ± 1.34^d	64.45 ± 1.44^ef	60.85 ± 1.88^efg	60.70 ± 1.25^cde
DET02	T. viride	Dehradun, Uttarakhand	KF361012	KT989062	31.00 ± 1.25^j	163.33 ± 1.22^c	72.05 ± 1.68^c	68.89 ± 1.55^cd	64.44 ± 1.66^cd	60.35 ± 1.35^cde
NAT03	T. viride	Nanital, Uttarakhand	KF361013	KT989062	61.67 ± 2.03^c	151.67 ± 1.10^d	61.80 ± 1.34^f	64.50 ± 1.39^ef	59.48 ± 1.95^g	60.45 ± 1.75^cde

* Within columns, mean ± SE values with a common letter do not differ significantly (P < 0.05), according to DMRT test
^xμmol of GlcNAc min⁻¹ mg⁻¹ protein
^ynmol of glucose min⁻¹ mg⁻¹ protein

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