Table 2 Nucleotide sequence variants of the 346-bp E-gene region isolated from human plasma and mosquito samples compared with their corresponding master sequences (hu2 and mo1)
From: Genomic studies of envelope gene sequences from mosquito and human samples from Bangkok, Thailand
Sequence variant | No. of clones (% of total) | Clones | No. of nucleotide substitutionsa | Total no. of substitutionsb | dN/dSc,d |
|---|---|---|---|---|---|
hu1 | 1 (1.80) | 36-2 | 1 | 1 | 0.16 |
hu2 | 16 (29.1) | 36-3, 4, 6, 8, 9, 10, 11, 12 47-2, 3, 5, 6, 7, 8, 9, 10 | 0 | 0 | 1.00 |
hu3 | 1 (1.8) | 36-14 | 1 | 1 | 0.16 |
hu4 | 1 (1.8) | 47-4 | 1 | 1 | 1.00 |
hu5 | 1 (1.8) | 47-1 | 1 | 1 | 1.00 |
hu6 | 10 (18) | 37-1, 2, 3, 4, 5, 6, 8, 10, 16, 18 | 12 | 120 | Â |
hu7 | 9 (16.4) | 41-2, 4, 9, 18, 23, 24, 26, 27, 28 | 10 | 90 | 1.00 |
hu8 | 1 (1.8) | 45-1 | 10 | 10 | 1.00 |
hu9 | 4 (7.3) | 45-5, 6, 14, 25 | 9 | 36 | 1.00 |
hu10 | 1 (1.8) | 45-15 | 10 | 10 | 1.00 |
hu11 | 8 (14.5) | 50-2, 3, 4, 6, 7, 8, 9, 10 | 11 | 88 | 1.00 |
hu12 | 1 (1.8) | 50-1 | 12 | 12 | 1.00 |
hu13 | 1 (1.8) | 50-5 | 12 | 12 | 1.00 |
Total | 55 | Â | Â | 382 | Â |
m1 | 11 (39.3) | 56-4, 7, 15 275-24, 25, 27, 30, 32, 33, 35, 36 | 0 | 0 | 1.00 |
m2 | 1 (3.5) | 56-20 | 1 | 1 | 0.16 |
m3 | 1 (3.5) | 275-26 | 1 | 1 | 0.16 |
m4 | 1 (3.5) | 275-31 | 2 | 2 | 0.08 |
m5 | 2 (7.1) | 275-37, 38 | 9 | 18 | 1.00 |
m6 | 1 (3.5) | 275-39 | 1 | 1 | 0.16 |
m7 | 1 (3.5) | 275-40 | 1 | 1 | 0.16 |
m8 | 8 (28.6) | 56-2, 5, 6, 10, 12, 13, 14, 17 | 12 | 96 | 1.00 |
m9 | 1 (7.1) | 56-3 | 14 | 14 | 1.00 |
m10 | 1 (3.5) | 56-8 | 13 | 13 | 1.00 |
Total | 28 | Â | Â | 147 | Â |