Table 4 Tandem repeat sequences in the S. purpurea mt genome
From: Assembly and analysis of the complete Salix purpurea L. (Salicaceae) mitochondrial genome sequence
No. | Size (bp) | Location | Repeat |
|---|---|---|---|
1 | 14 | IGS(nad5, trnV-GAC) | TTTAAGAATACCGA (×2) |
2 | 13 | IGS(trnV-GAC,cox1) | TTAGTTTATGAAT (×2) |
3 | 15 | IGS(trnM-CAT, ccmFc) | ATTATAGGATTATATT (×2.1) |
4 | 21 | IGS(ccmFc, trnS-GGA) | TATTATAAGATCATCTCACCT (×2) |
5 | 19 | IGS(ccmFc, trnS-GGA) | TTTTCTTCTTGCTTCTGTT (×2.1) |
6 | 20 | IGS(atp8, nad5) | AGAGTATGAAAGAACAGAAT (×2) |
7 | 13 | IGS(atp8, nad5) | AAGAATGAATTAC (×2.2) |
8 | 15 | nad1 | TAAAAAAAAAAAGGC (×2) |
9 | 28 | IGS(rps4, trnP-TGG) | TATAAAGAAAGACCTTGTACATCTGTCC (×2.1) |
10 | 22 | IGS(trnP-TGG, rpl10) | TTTCTTCCCTCTCTATAGCCTA (×2) |
11 | 4 | IGS(atp1,trnH-GTG) | CTTT (×6.5) |
12 | 25 | IGS(atp1,trnH-GTG) | TCGACTGTTAAGGACACAGAGGGGA (×1.9) |
13 | 22 | IGS(atp1,trnH-GTG) | TTCGTGTACCAATTTCAGTGGT (×2) |
14 | 14 | IGS(trnN-GTT, trnY-GTA) | TTAGGTAGGATAGA (×2.1) |
15 | 7 | nad2 (intron) | CTTATAT (×4) |
16 | 18 | nad2 (intron) | AACATTATAAGAAAAGAT(×2.1) |
17 | 24 | IGS(rpl16,trnP-TGG) | CATAACCAGGCAGTGAGGAATCTT (×2) |
18 | 13 | IGS(trnG-GCC,cox2) | AATAAGAATAATA (×2.8) |