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Table 1 Primer sequences for microarray

From: Genotyping and detection of common avian and human origin-influenza viruses using a portable chemiluminescence imaging microarray

Primer

Sequence (5′–3′)

Target

Gene

Location

Referencea

NA-1Sa

GTTCTATGCTCTCAGCCAAGG

H7N9

NA

378–398

CY146910

NA9r-B-4

GCATTGTTGTTTGGTCCTGATATAC

H7N9

NA

569–593

CY146910

H7F1

AGACCTCGGTCAATGYGG

H7N9

HA

201–218

CY146908

H7R2-B

TTCACGAATTTCCCAGGATAACA

H7N9

HA

313–335

CY146908

NF11

CAAGAGTCTGAATGTGCATG

H5N1

NA

699–718

AM183680

NR22B

GGATCCCAAATCATTTCAAA

H5N1

NA

1134–1153

AM183680

F7

GTGTGTGCAGGGATAACTGG

PH1N1

NA

889–908

CY081570

R4aB

ATTAGGGCGTGGATTGTCTC

PH1N1

NA

988–1007

CY081570

NF12

CAAGAGTCTGAATGTGTCTG

H1N1

NA

699–718

AJ006954

NR21B

GGATCCCAAATCATCTCAAA

H1N1

NA

1131–1150

AJ006954

NF5

CTGACCAACACCACCATA

H3N2

NA

221–238

CY091836

NR5B

CATCAATAGGGTCCGATA

H3N2

NA

482–499

CY091836

MF2

GGCCCCCTCAAAGCCGAGAT

Influenza A

M

77–96

HQ664927

MR2B

CAAAGCGTCTACGCTGCAGT

Influenza A

M

244–263

HQ664927

FBF1

ATGGCCATCGGATCCTCAACTCACTC

Influenza B

NS

737–762

CY099917

FBR1B

TCATGTCAGCTATTATGGAGCTGTT

Influenza B

NS

956–980

CY099917

RP-F4

TGGGATCATGTTAAGTAGAAGTAGC

Human

RNase P

1821–1854

NM_006413

RP-R4B

CTCCATTGTTTTAGAGCCCTTAC

Human

RNase P

1882–1904

NM_006413

RP-F1

TGCGGGTTGGAGAAAATACA

Human

RNase P

1964–1983

NM_006413

RP-R1B

GGAGGCTGAGGCAGGAGAAT

Human

RNase P

2086–2105

NM_006413

RP-F

AGATTTGGACCTGCGAGCG

Human

RNase P

50–68

NM_006413

RP-RB

GAGCGGCTGTCTCCACAAGT

Human

RNase P

95–114

NM_006413

  1. aThe numbers are NCBI accession codes