Table 3 A summary of topic model types in the relevant studies (see “Topic models applied to bioinformatics” section)
From: An overview of topic modeling and its current applications in bioinformatics
References | Types of topic model |
|---|---|
Castellani et al. (2010), Bicego et al. (2010a, b, 2012), Masseroli et al. (2012), Pinoli et al. (2013) | PLSA |
Caldas et al. (2009), Chen et al. (2010, 2012a, b), Coelho et al. (2010), Pan et al. (2010), Bicego et al. (2010b), Konietzny et al. (2011), Zhang et al. (2012a), Bisgin et al. (2013), Lee et al. (2014), Pinoli et al. (2014), Pratanwanich and Lio (2014), Randhave and Sonkamble (2014), Youngs et al. (2014), La Rosa et al. (2015), Zhang et al. (2015) | LDA |
LPD | |
Liu et al. (2011) | Corr-LDA |
Sinkkonen et al. (2008) | topic model for relational data |
Perina et al. (2010) | BaLDA |
Dawson and Kendziorski (2012) | survLDA |
Fang et al. (2015) | Semi-parametric transelliptical topic model |
Chen et al. (2011) | LDA-B |