Table 1 Molecular data: The genotype of 60 SSR loci and five chloroplast SSR loci of the analyzed varieties for the proposed kinship and of Pinot Noir as reference for size calibration
SSR loci | Uva rosa antica Quagliano | Bombino bianco | Uva di Troia | Bombino nero | Impigno | Pinot Noir |
|---|---|---|---|---|---|---|
VVS2 | 133–143 | 145–151 | 143–151 | 133–145 | 133–145 | 137–151 |
VVMD5 | 225–225 | 227–231 | 225–231 | 225–227 | 225–227 | 227–237 |
VVMD7 | 238–242 | 248–252 | 242–252 | 238–252 | 238–248 | 238–242 |
VVMD25 | 239–267 | 241–263 | 263–267 | 239–241 | 239–241 | 239–249 |
VVMD27 | 178–188 | 180–194 | 188–194 | 178–180 | 178–194 | 184–188 |
VVMD28 | 249–259 | 245–249 | 245–249 | 249–249 | 249–249 | 219–237 |
VVMD32 | 240–250 | 258–272 | 250–272 | 240–258 | 250–272 | 240–272 |
VrZAG21 | 191–205 | 191– 191 | 191–191 | 191–205 | 191–191 | 201–207 |
VrZAG62 | 185–187 | 189–199 | 187–199 | 185–199 | 185–189 | 187–193 |
VrZAG79 | 250–254 | 250–258 | 250–250 | 254–258 | 254–258 | 240–244 |
ISV2 | 166–170 | 166–170 | 170–170 | 166–166 | 166–170 | 152–166 |
ISV3 | 134–140 | 140–146 | 140–140 | 140–140 | 140–140 | 134–146 |
ISV4 | 189–199 | 189–193 | 189–199 | 189–189 | 189–189 | 171–179 |
VMCNG4b9 | 162–164 | 150–176 | 164–176 | 162–176 | 162–176 | 158–162 |
VChr-1b | 96–108 | 100–100 | 96–100 | 96–100 | 100–108 | 100–108 |
VChr-2b | 116–124 | 116–124 | 116–124 | 116–124 | 116–124 | 124–124 |
VChr-4a | 182–199 | 182–199 | 199–199 | 182–182 | 182–199 | 182–199 |
VChr-5b | 202–218 | 202–206 | 206–218 | 202–202 | 202–202 | 190–190 |
VChr-5c | 104–128 | 88–120 | 88–128 | 104–120 | 88–104 | 96–116 |
VChr-6a | 182–186 | 182–182 | 182–182 | 182–186 | 182–186 | 182–186 |
VChr-7b | 181–185 | 181–189 | 181–185 | 181–186 | 181–189 | 181–189 |
VChr-9a | 90–118 | 109–115 | 90–115 | 90–115 | 115–118 | 90–98 |
VChr-10b | 134–134 | 138–144 | 134–138 | 134–144 | 134–144 | 138–144 |
VChr-11b | 155–160 | 157–164 | 160–164 | 155–157 | 155–164 | 152–164 |
VChr-12a | 137–144 | 144–144 | 144–144 | 144–144 | 144–144 | 137–144 |
VChr-13a | 141–157 | 149–157 | 157–157 | 141–149 | 149–157 | 157–157 |
VChr-15a | 157–157 | 149–149 | 149–157 | 149–157 | 149–157 | 153–157 |
VChr-16a | 110–114 | 114–114 | 110–114 | 110–114 | 110–114 | 102–164 |
VChr-17a | 181–// | 189–189 | 189–// | 189–// | 181–189 | 189–189 |
VChr-18a | 164–168 | 152–160 | 160–168 | 152–164 | 152–168 | 164–168 |
VChr-19a | 141–141 | 138–141 | 141–141 | 138–141 | 138–141 | 123–138 |
VVI-b01 | 298–298 | 294–298 | 294–298 | 294–298 | 294–298 | 292–298 |
VVI-b63 | 150–154 | 126–154 | 126–154 | 126–154 | 150–154 | 148–148 |
VVI-b94 | 292–306 | 284–292 | 292–306 | 292–306 | 284–306 | 284–296 |
VVI-f52 | 262–274 | 260–260 | 260–262 | 260–274 | 260–262 | 284–286 |
VVI-h54 | 166–168 | 166–174 | 166–166 | 166–174 | 166–166 | 164–168 |
VVI-i51 | 253–265 | 263–263 | 253–263 | 263–265 | 263–265 | 265–267 |
VVI-m10 | 357–371 | 369–379 | 371–379 | 357–379 | 357–369 | 357–371 |
VVI-m11 | 291–301 | 287–301 | 287–291 | 301–301 | 291–301 | 291–291 |
VVI-m25 | 167–169 | 177–177 | 171–177 | 169–177 | 167–177 | 167–187 |
VVI-n54 | 100–106 | 106–112 | 106–112 | 106–106 | 106–106 | 92–96 |
VVI-n61 | 361–375 | 349–371 | 349–361 | 361–371 | 349–375 | 371–377 |
VVI-n94 | 278–289 | 286–289 | 278–289 | 286–289 | 289–289 | 289–289 |
VVI-o55 | 141–143 | 143–147 | 141–147 | 141–147 | 141–147 | 143–147 |
VVI-p25b | 342–360 | 340–362 | 360–362 | 340–342 | 360–362 | 362–362 |
VVI-p37 | 150–156 | 144–148 | 144–150 | 148–156 | 144–150 | 140–150 |
VVI-p77 | 172–182 | 186–190 | 172–190 | 182–186 | 172–190 | 180–190 |
VVI-r09 | 258–260 | 258–264 | 258–264 | 258–260 | 258–258 | 242–248 |
VVI-s21 | 284–284 | 284–290 | 284–284 | 284–290 | 284–284 | 270–284 |
VVI-s58 | 304–308 | 304–308 | 308–308 | 304–308 | 304–304 | 294–294 |
VVI-s63 | 190–212 | 190–212 | 190–212 | 190–190 | 190–212 | 190–190 |
VVI-u04 | 182–189 | 182–191 | 182–191 | 182–191 | 182–189 | 166–170 |
VVI-v37 | 159–167 | 159–167 | 159–167 | 159–167 | 167–167 | 149–159 |
VVI-v69 | 271–271 | 257–271 | 257–271 | 257–271 | 257–271 | 289–291 |
ccSSR-5 | 256 | 255 | 255 | 255 | 255 | 256 |
ccSSR-14 | 201 | 202 | 202 | 202 | 202 | 201 |
ccSSR-23 | 285 | 286 | 286 | 286 | 286 | 285 |
cpSSR10 | 110 | 111 | 111 | 111 | 111 | 110 |
NTCP8 | 250 | 250 | 250 | 250 | 250 | 250 |
VChr-3a | 190–190 | 187–199 | 190–199 | 187–190 | 187–190 | 202–202 |
VChr-8b | 121–136 | 103–106 | 106–121 | 103–136 | 103–136 | 103–139 |
VrZAG112 | 231–235 | 237–245 | 231–237 | 231–237 | 231–237 | 243–245 |
VVI-b23 | 305–323 | 305–311 | 305–305 | 305–305 | 305–305 | 309–331 |
VVI-b66 | 89–89 | 89–109 | 89–109 | 89–109 | 89–109 | 103–109 |
VVI-v61 | 169–190 | 169–192 | 169–190 | 169–192 | 169–190 | 169–169 |