Skip to main content

Advertisement

Table 3 Identification success rates using TaxonDNA (Species Identifier) program under ‘Best Match’ and ‘Best Closest Match’ methods

From: Assessment of mangroves from Goa, west coast India using DNA barcode

Barcodes No. of Sequences Best Match (%) Best closest match (%) T (%) No. of clusters Match/mismatch
Correct Ambiguous Incorrect Correct Ambiguous Incorrect No match
rbcL 44 47.72 36.36 15.9 31.81 27.27 11.36 13 0 23 6/8
matK 43 72.09 25.58 2.32 39.53 13.95 2.32 44.18 0.11 24 10/4
rbcL + matK 42 66.66 16.66 16.66 66.66 16.66 16.66 0 0.2 21 8/6
  1. TaxonDNA is an alignment-based method based on sequence distance matrices. Percentage of correct/incorrect/ambiguous assignment of a taxon is compared using molecular operating taxonomic unit (MOTU). The species specific clustering using match and mismatch criteria
  2. T Threshold