Table 4 Significantly enriched pathways of all unigenes and DEGs in C. faberi
Pathway | No. of all genes with pathway annotation (19,715) | No. of DEGs with pathway annotation (66) | Pathway ID | |
|---|---|---|---|---|
Up-regulated genes | Down-regulat-ed genes | |||
Metabolic pathways | 3681 | 60 | 240 | ko01100 |
Biosynthesis of secondary metabolites | 1616 | 66 | 186 | ko01110 |
Microbial metabolism in diverse environments | 803 | 46 | 96 | ko01120 |
Ribosome | 509 | 18 | 71 | ko03010 |
Protein processing in endoplasmic reticulum | 507 | 14 | 48 | ko04141 |
Spliceosome | 469 | 27 | 17 | ko03040 |
RNA transport | 457 | 21 | 21 | ko03013 |
Starch and sucrose metabolism | 403 | 12 | 48 | ko00500 |
Cell cycle | 355 | 25 | 8 | ko04110 |
Tuberculosis | 337 | 11 | 26 | ko05152 |
Pyrimidine metabolism | 330 | 19 | 13 | ko00240 |
RNA degradation | 327 | 19 | 7 | ko03018 |