Table 2 33 SSR markers selected from 15 linkage groups of tea plant
From: An efficient identification strategy of clonal tea cultivars using long-core motif SSR markers
Linkage | Primer | Motif | Forward (5′ → 3′) | Reverse (5′ → 3′) | Tm (°C) | Dye |
|---|---|---|---|---|---|---|
LG01 | TM447 | (AAAAG)5 | TGTTGTTAACGGTGTTCGGA | GCATTTGTTTTCTCTCTCTGCC | 52 | TAMRA |
LG02 | TM514 | (TCA)5 | ATGTCTGGCCGTGGATTAAG | ATGGCAGGCTGTTCTGATTT | 52 | FAM |
LG02 | TM480 | (GTA)5 | CGAAGAGTCGTTTCGAGGAG | CATCCCTTGTCTTCTCCCCT | 52 | FAM |
LG03 | TM337 | (CCAATT)6 | GTGCGGCAAAGCTGTCTT | ACCTCCATCTCCAAACCC | 60 | FAM |
LG03 | TM453 | (TTC)6 | AAGTCACAACACCACCACCA | GAGGCAGCGATAGTACCAGG | 52 | TAMRA |
LG04 | TM343 | (TGTTGA)3 | ATCTTGGTAAGCTGCTCT | ATCATTGCTTTTGTTCTG | 56 | FAM |
LG04 | TM445 | (GTA)5 | CCCAAATCCCAAGCTGTAGA | ACGATCGAGCCTGCAATACT | 52 | TAMRA |
LG04 | TM502 | (AGAT)4 | TGTCTTTTGTGGTTTCGTGC | GGGAGACGATGGATCAGAAA | 50 | FAM |
LG04 | TM422 | (TTC)7 | GGACTTCGTTGCTTCCTTTG | CCATTCTCGACGAATCCAGT | 52 | TAMRA |
LG04 | TM369 | (GAA)8 | CGGAGCTGGAATCTGAAGAG | GGAAGGGTTGCAAATTCTGA | 52 | FAM |
LG04 | TM523 | (AAAAGA)3 | TTTGCATTTTTGCCAAGTGA | CTTGCGTGACAATGCTCATAA | 52 | FAM |
LG05 | TM589 | (CTCCT)3 | CACCACTGCCCAACAAACT | GAGGATGATGATTCGGGAGA | 52 | TAMRA |
LG05 | TM428 | (CAC)7 | TCTCCTCCTCGATCCTCAGA | CCCTCTTCTTCGGATCCTTC | 52 | FAM |
LG06 | TM341 | (TCGAA)5 | CGTACTTCAACGCTATAGCTCTCT | CTTCGGCATGGCTTCTAAAC | 52 | FAM |
LG07 | TM415 | (CCTTC)3 | TCCACCCAAAACCTACTCTCTC | TATTTCGGAAACGAGCCATC | 52 | TAMRA |
LG07 | TM426 | (AGA)11 | TGAGAGTGCTTGTCTGGGTG | CAACTACCCCTTTTCCCCAT | 52 | FAM |
LG07 a | TM324 | (TTTTTG)5 | CATCGTTTCATTGCTTATT | ATTTTCGGCATTGTCTT | 54 | FAM |
LG08 | TM352 | (GAGGTG)4 | CTTCTTCCTGTCGGGTTGAG | GTCAACGGCCTATAACGGAA | 52 | TAMRA |
LG08 | TM395 | (TCTTTT)4 | GATTGTAGGACAGCCGTGGT | AAGTTGGGGCTTGTTAAAGGA | 52 | FAM |
LG08 | TM493 | (AGG)6 | GATAGGGACAGAGATCGGCA | TTTCCAACCTTGCTCAAACC | 52 | FAM |
LG09 a | TM442 | (ATACAC)3 | CAAGCCAAACCTTGCTGAAT | CTGTCCTGTGTCTGGTGGTG | 52 | FAM |
LG09 | TM440 | (TTTGC)3 | TTGACCCGAATAAAATGGGA | CCTCAAAACATGCTTTTCTTAATC | 52 | FAM |
LG10 | TM407 | (CAAGAT)3 | AACAACAGCAGCGAAGATGA | CCACCACTGATGACCCTTTT | 52 | TAMRA |
LG10 a | TM569 | (GTGA)5 | GCAAATTCGTAAGGCGAGAG | CTGACGTTTACCCTCGTTCC | 52 | FAM |
LG11 a | TM461 | (ATTTTT)6 | GGCTAGGGTTTCTCCCACTT | GAAGGTCGAAGCGATGTTGT | 52 | TAMRA |
LG11 a | TM581 | (AAAAAC)3 | AAGGATCACTGGTAAAAAGCCA | CTTCTGAGCCGTTCTTGAGC | 52 | FAM |
LG12 | TM241 | (GAGAA)3 | ATCGGCGACGGTGGAAGT | GCCAGCGGAGAGGAGAAG | 58 | FAM |
LG12 | TM499 | (AGA)5 | AACTGTGACACCGATTGCAG | AAGTTTCACTTGCCAGCACC | 54 | FAM |
LG13 | TM425 | (TTATT)3 | CACGTTCGCATATTTTGGTG | TTGCTGACGACAACATTTTATT | 52 | FAM |
LG13 | TM576 | (TTTTC)3 | CGCTCTTCCTTGTTTTCTGG | CACAAGCCATTGTAGAGAGAGAAA | 52 | FAM |
LG14 | TM348 | (TATC)7 | GAGATGGCTTGCTCAAGGTC | CCCCAACCAAATCAAATCAC | 52 | FAM |
LG14 a | TM351 | (GGAGAA)3 | GGGTGAGAGTAAAGGGGGAG | AAACACAAAATCAAATTTGTCAGAA | 52 | FAM |
LG15 | TM601 | (GGA)5 | TTGCACTGGAGTGCGATAAG | CATCGCCACCAAACTCTTCT | 52 | FAM |