Population genetic structure analysis and forensic evaluation of Xinjiang Uigur ethnic group on genomic deletion and insertion polymorphisms

Mei, Ting; Shen, Chun-Mei; Liu, Yao-Shun; Meng, Hao-Tian; Zhang, Yu-Dang; Guo, Yu-Xin; Dong, Qian; Wang, Xin-Xin; Yan, Jiang-Wei; Zhu, Bo-Feng; Zhang, Li-Ping

doi:10.1186/s40064-016-2730-3

SpringerPlus

Table 1 Allele frequencies and forensic parameters for 30 InDels in Uigur group from Xinjiang Uigur Autonomous Region (n = 136)

From: Population genetic structure analysis and forensic evaluation of Xinjiang Uigur ethnic group on genomic deletion and insertion polymorphisms

HLD	rs#	Chromosome localization	DIP+	DIP−	MP	PD	PIC	PE	TPI	Ho	He	HWE
6	1610905	16q13	0.5184	0.4816	0.3539	0.6461	0.3747	0.1463	0.9067	0.4485	0.5030	0.2196
39	17878444	1p22.1	0.2978	0.7022	0.4303	0.5697	0.3308	0.1359	0.8831	0.4338	0.4213	0.7398
40	2307956	1p32.3	0.5515	0.4485	0.3803	0.6197	0.3723	0.1875	1.0000	0.5000	0.4984	0.9354
45	2307959	2q31.1	0.6066	0.3934	0.3874	0.6126	0.3634	0.1689	0.9577	0.4779	0.4808	0.9798
48	28369942	2q11.2	0.4007	0.5993	0.3729	0.6271	0.3650	0.1463	0.9067	0.4485	0.4839	0.4338
56	2308292	4q25	0.6581	0.3419	0.3859	0.6141	0.3488	0.0994	0.8000	0.3750	0.4533	0.0724
58	1610937	5q14.1	0.4154	0.5846	0.3729	0.6271	0.3677	0.1573	0.9315	0.4632	0.4893	0.5714
64	1610935	5q12.3	0.7206	0.2794	0.4437	0.5563	0.3216	0.1308	0.8718	0.4265	0.4057	0.5961
67	1305056	5q33.2	0.6140	0.3860	0.4047	0.5953	0.3617	0.1940	1.0149	0.5074	0.4775	0.4608
70	2307652	6q16.1	0.5699	0.4301	0.3965	0.6035	0.3701	0.2075	1.0462	0.5221	0.4939	0.4839
77	1611048	7q31.1	0.4890	0.5110	0.3716	0.6284	0.3749	0.1811	0.9855	0.4926	0.5035	0.8346
81	17879936	7q21.3	0.6471	0.3529	0.3991	0.6009	0.3524	0.1517	0.9189	0.4559	0.4601	0.9524
83	2308072	8p22	0.3640	0.6360	0.4417	0.5583	0.3558	0.2366	1.1148	0.5515	0.4664	0.0425
84	3081400	8q24.12	0.6213	0.3787	0.3654	0.6346	0.3598	0.0994	0.8000	0.3750	0.4740	0.0230
88	8190570	9q22.32	0.4632	0.5368	0.3854	0.6146	0.3736	0.2007	1.0303	0.5147	0.5010	0.7164
92	17174476	11q22.2	0.4816	0.5184	0.4054	0.5946	0.3747	0.2366	1.1148	0.5515	0.5030	0.2407
93	2307570	12q22	0.5257	0.4743	0.3881	0.6119	0.3743	0.2075	1.0462	0.5221	0.5024	0.6153
97	17238892	13q12.3	0.3382	0.6618	0.3949	0.6051	0.3475	0.1212	0.8500	0.4118	0.4510	0.3787
99	2308163	14q23.1	0.6801	0.3199	0.4181	0.5819	0.3404	0.1463	0.9067	0.4485	0.4383	0.7809
101	2307433	15q26.1	0.5000	0.5000	0.3616	0.6384	0.3750	0.1630	0.9444	0.4706	0.5037	0.4660
111	1305047	17p11.2	0.3346	0.6654	0.4080	0.5920	0.3461	0.1463	0.9067	0.4485	0.4486	0.9695
114	2307581	17p13.3	0.3199	0.6801	0.4134	0.5866	0.3404	0.1359	0.8831	0.4338	0.4383	0.9461
118	16438	20p11.1	0.6066	0.3934	0.3941	0.6059	0.3634	0.1811	0.9855	0.4926	0.4808	0.7505
122	8178524	21q22.11	0.4485	0.5515	0.3803	0.6197	0.3723	0.1875	1.0000	0.5000	0.4984	0.9354
124	6481	22q12.3	0.6360	0.3640	0.3902	0.6098	0.3558	0.1463	0.9067	0.4485	0.4664	0.7053
125	16388	22q11.23	0.4890	0.5110	0.3487	0.6513	0.3749	0.1359	0.8831	0.4338	0.5035	0.1139
128	2307924	1q31.3	0.4338	0.5662	0.4087	0.5913	0.3706	0.2291	1.0968	0.5441	0.4949	0.2336
131	1611001	7q36.2	0.4890	0.5110	0.4050	0.5950	0.3749	0.2366	1.1148	0.5515	0.5035	0.2448
133	2067235	3p22.1	0.4449	0.5551	0.3848	0.6152	0.3719	0.1940	1.0149	0.5074	0.4976	0.7865
136	16363	22q13.1	0.4779	0.5221	0.3689	0.6311	0.3745	0.1750	0.9714	0.4853	0.5027	0.7164

HLD human locus deletion/insertion polymorphism, DIP− frequency of short allele, DIP+ frequency of long allele, Ho observed heterozygosity, He expected heterozygosity, MP matching probability, PD power of discrimination, PE probability of exclusion, PIC Polymorphic information contents, TPI typical paternity index, HWE probability value of the exact test for Hardy–Weinberg equilibrium, p the short arm of a chromosome, q the long arm of a chromosome

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