Table 1 tRNA genes in six Streptomyces genomes
AA | Codon | Anticodon | Codon-anticodon recognition | tRNA genes* | |||||
|---|---|---|---|---|---|---|---|---|---|
A3(2) 63** | J1074 65 | ATCC 10712 65 | TK24 61 | ATCC 14672 68 | ATCC 27064 66 | ||||
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 |
Ala (A) | GCT | AGC | AGC, GGC | – | – | – | – | – | – |
GCC | GGC | AGC, GGC | SCOt14, SCOt15 | XNR_4362, XNR_4366 | SVEN_t15, SVEN_t16, SVEN_t56 | SLI_10014, SLI_10015 | SSFG_RS23155, SSFG_RS23165 | SCN_RS08355, SCN_RS08365 | |
GCA | TGC | AGC, TGC | SCOt32 | XNR_3021 | SVEN_t34 | SLI_10033 | SSFG_RS17340 | SCN_RS14115 | |
GCG | CGC | TGC, CGC | SCOt26 | XNR_2123 | SVEN_t28 | SLI_10026 | SSFG_RS33025, SSFG_RS20210 | SCN_RS11130 | |
Val (V) | GTT | AAC | AAC, GAC | – | – | – | – | – | – |
GTC | GAC | AAC, GAC | vala, valb, valg | XNR_5303, XNR_5304, XNR_5305 | SVEN_t6, SVEN_t7, SVEN_t8 | SLI_10007 | SSFG_RS28215, SSFG_RS28210, SSFG_RS28220 | SCN_RS03735, SCN_RS03725, SCN_RS03730, SCN_RS04530 | |
GTA | TAC | AAC, TAC | SCOt10 | XNR_4542 | SVEN_t11 | SLI_10010 | SSFG_RS24205 | SCN_RS07625 | |
GTG | CAC | TAC, CAC | SCOt01, SCOt02 | XNR_5317, XNR_5319 | SVEN_t2, SVEN_t3 | SLI_10003, SLI_10004 | SSFG_RS28310, SSFG_RS28275, | SCN_RS03655, SCN_RS03665 | |
Thr (T) | ACT | AGT | AGT, GGT | – | – | – | – | – | – |
ACA | TGT | AGT, TGT | SCOt47 | XNR_2551 | SVEN_t49 | SLI_10051 | SSFG_RS19050 | SCN_RS15670 | |
ACC | GGT | AGT, GGT | SCOt49, SCOt61 | XNR_1117, XNR_3695 | SVEN_t53, SVEN_t64 | SLI_10053, SLI_10065 | SSFG_RS14320 | SCN_RS17550, SCN_RS22525 | |
ACG | CGT | TGT, CGT | SCOt28 | XNR_2697 | SVEN_t30 | SLI_10029 | SSFG_RS15630 | SCN_RS11750 | |
Pro (P) | CCT | AGG | AGG, GGG | – | – | – | – | – | – |
CCC | GGG | AGG, GGG | SCOt63, SCOt64, SCOt65 | XNR_0211, XNR_0244 | SVEN_t67, SVEN_t68 | SLI_10067, SLI_10068, SLI_10069 | SSFG_RS03965, SSFG_RS04060, SSFG_RS503850 | SCN_RS25645, SCN_RS26115 | |
CCA | TGG | AGG, TGG | SCOt16 | XNR_4324 | SVEN_t17 | SLI_10016 | SSFG_RS22915 | SCN_RS08555 | |
CCG | CGG | TGG, CGG | SCOt29 | XNR_2739 | SVEN_t31 | SLI_10030 | SSFG_RS15825 | SCN_RS12385 | |
Ser (S) | TCT | AGA | AGA, GGA | – | – | – | – | – | – |
TCC | GGA | AGA, GGA | SCOt38 | XNR_2859 | SVEN_t40 | SLI_10039 | SSFG_RS18130 | SCN_RS14915 | |
TCA | TGA | AGA, TGA | SCOt34 | XNR_2906 | SVEN_t36 | SLI_10035 | SSFG_RS17845 | SCN_RS13655 | |
TCG | CGA | TGA, CGA | SCOt37 | XNR_2882 | SVEN_t39 | SLI_10038 | SSFG_RS18035 | SCN_RS14685 | |
Ser (Z) | AGT | ACT | ACT, GCT | – | – | – | – | – | – |
AGC | GCT | GCT | SCOt35 | XNR_2899 | SVEN_t37 | SLI_10036 | SSFG_RS17910 | SCN_RS13580 | |
Phe (F) | TTT | AAA | AAA, GAA | – | – | – | – | – | – |
TTC | GAA | GAA | SCOt42 | XNR_2833 | SVEN_t44 | SLI_10043 | SSFG_RS18285 | SCN_RS15085 | |
Met (M) | ATG | CAT | CAT | SCOt11, SCOt46, SCOt50, SCOt52, SCOt53 | XNR_1595, XNR_1597, XNR_2506, XNR_2818, XNR_3696, XNR_4468 | SVEN_t12, SVEN_t48, SVEN_t54, SVEN_t57 | SLI_10011, SLI_10047, SLI_10054, SLI_10056, SLI_10057 | SSFG_RS11885, SSFG_RS14315, SSFG_RS11875, SSFG_RS18340, SSFG_RS23665 | SCN_RS07950, SCN_RS15180, SCN_RS17555, SCN_RS19765, SCN_RS19775 |
Tyr (Y) | TAT | ATA | ATA, GTA | – | – | – | – | – | – |
TAC | GTA | GTA | SCOt48 | XNR_3691 | SVEN_t52 | SLI_10052 | SSFG_RS14340 | SCN_RS17530 | |
His (H) | CAT | ATG | ATG, GTG | – | – | – | – | – | – |
CAC | GTG | GTG | SCOt19 | XNR_4179 | SVEN_t20 | SLI_10019 | SSFG_RS00915 | SCN_RS09385 | |
Gln (Q) | CAA | TTG | TTG | – | XNR_2059 | SVEN_t27 | – | SSFG_RS20490 | SCN_RS10785, |
CAG | CTG | TTG, CTG | SCOt56, SCOt59 | XNR_1260, XNR_1263 | SVEN_t59, SVEN_t62 | SLI_10059, SLI_10062 | SSFG_RS10360, SSFG_RS10345 | SCN_RS21830, SCN_RS21845 | |
Asn (N) | AAT | ATT | ATT, GTT | – | – | – | – | – | – |
AAC | GTT | GTT | SCOt12, SCOt13 | XNR_4469, XNR_4470 | SVEN_t13, SVEN_t14 | SLI_10012, SLI_10013 | SSFG_RS23655, SSFG_RS23660 | SCN_RS07955, SCN_RS07960 | |
Lys (К) | AAA | TTT | TTT | SCOt45 | XNR_2825 | SVEN_t47 | SLI_10046 | – | SCN_RS15130 |
AAG | CTT | TTT, CTT | SCOt20, SCOt21, SCOt22 | XNR_1720, XNR_1739, XNR_1743 | SVEN_t21, SVEN_t22, SVEN_t23 | SLI_10020, SLI_10021, SLI_10023 | SSFG_RS21980, SSFG_RS21890, SSFG_RS21910 | SCN_RS09450, SCN_RS09510, SCN_RS09530 | |
Asp (D) | GAT | ATC | ATC, GTC | – | – | – | – | – | – |
GAC | GTC | GTC | SCOt41, SCOt43 | XNR_2832, XNR_2835 | SVEN_t43, SVEN_t45 | SLI_10042, SLI_10044 | SSFG_RS18290, SSFG_RS18275 | SCN_RS15055, SCN_RS15090 | |
Glu (E) | GAA | TTC | TTC | SCOt44 | XNR_2831 | SVEN_t46 | SLI_10045 | SSFG_RS18295 | SCN_RS15095 |
GAG | CTC | TTC, CTC | SCOt57, SCOt58, SCOt60 | XNR_1259, XNR_1261, XNR_1262 | SVEN_t60, SVEN_t61, SVEN_t63 | SLI_10060, SLI_10061, SLI_10063 | SSFG_RS10340, SSFG_RS10355, SSFG_RS10350 | SCN_RS21835, SCN_RS21840, SCN_RS21850 | |
Cys (C) | TGT | ACA | ACA, GCA | – | – | – | – | – | |
TGC | GCA | GCA | cysT | XNR_1833, XNR_5306 | SVEN_t25, SVEN_t5 | SLI_10006 | SSFG_RS28225, SSFG_RS21415 | SCN_RS03720, SCN_RS09880 | |
Trp (W) | TGG | CCA | CCA | SCOt51 | XNR_3704 | SVEN_t55 | SLI_10055 | SSFG_RS14265 | SCN_RS17590 |
Leu (L) | TTA | TAA | TAA | bldA | XNR_1995 | SVEN_t26 | SLI_10025 | SSFG_RS20685 | SCN_RS10610 |
TTG | CAA | TAA, CAA | SCOt09 | XNR_4869 | SVEN_t10 | SLI_10009 | SSFG_RS25860 | SCN_RS05770 | |
CTT | AAG | AAG, GAG | – | – | – | – | – | – | |
CTC | GAG | AAG, GAG | SCOt08, SCOt62 | XNR_0380, XNR_5150 | SVEN_t1, SVEN_t66, SVEN_t9 | SLI_10008, SLI_10066 | SSFG_RS05545, SSFG_RS27585 | SCN_RS04345, SCN_RS24980 | |
CTA | TAG | AAG, TAG | SCOt23 | XNR_1776 | SVEN_t24 | SLI_10022 | SSFG_RS21585 | SCN_RS09675 | |
CTG | CAG | TAG, CAG | SCOt31 | XNR_3043 | SVEN_t33 | SLI_10032 | SSFG_RS17260 | SCN_RS14270 | |
Ile (I) | ATT | AAT | AAT, GAT | – | – | – | – | – | – |
ATC | GAT | AAT, GAT | SCOt33 | XNR_3013 | SVEN_t35 | SLI_10034 | SSFG_RS17370 | SCN_RS14095 | |
ATA | TAT | AAT, GAT, TAT | – | – | – | – | – | – | |
Arg (R) | CGT | ACG | ACG, GCG | SCOt36 | XNR_2898 | SVEN_t38 | SLI_10037 | SSFG_RS17915 | SCN_RS13575 |
CGC | GCG | ACG, GCG | – | – | – | – | – | – | |
CGA | TCG | ACG, TCG | – | – | – | – | – | – | |
CGG | CCG | TCG, CCG | SCOt55 | XNR_1483 | SVEN_t58 | SLI_10058 | SSFG_RS11240 | SCN_RS20605 | |
AGA | TCT | TCT | SCOt18 | XNR_4258 | SVEN_t19 | SLI_10018 | SSFG_RS22445 | SCN_RS08865 | |
AGG | CCT | TCT, CCT | SCOt27 | XNR_2176 | SVEN_t29 | SLI_10027 | SSFG_RS20070 | SCN_RS17025 | |
Gly (G) | GGT | ACC | ACC, GCC | – | – | – | – | – | – |
GGC | GCC | ACC, GCC | SCOt39, SCOt40, glyUa | XNR_2848, XNR_2853, XNR_5307 | SVEN_t4, SVEN_t41, SVEN_t42 | SLI_10005, SLI_10040, SLI_10041 | SSFG_RS18190, SSFG_RS18165, SSFG_RS28230 | SCN_RS03715, SCN_RS14945, SCN_RS14970 | |
GGA | TCC | ACC, TCC | SCOt17 | XNR_4323 | SVEN_t18 | SLI_10017 | SSFG_RS02000, SSFG_RS18195, SSFG_RS34410, SSFG_RS22910 | SCN_RS08560, SCN_RS14975 | |
GGG | CCC | TCC, CCC | SCOt30 | XNR_3132 | SVEN_t32 | SLI_10031 | SSFG_RS06925, SSFG_RS16450 | SCN_RS12860 | |