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Table 2 List of SNPs predicted by regulomeDB score

From: A comprehensive in silico analysis of non-synonymous and regulatory SNPs of human MBL2 gene

dbSNP ID

RDB score

Category

Description

rs7096206

1f

Likely to affect binding and linked to expression of a gene target

eQTL + TF binding/DNase peak

rs930508

3a

Less likely to affect binding

TF binding + any motif + DNase peak

rs10556764

   

rs7084554

   

rs930507

4

Minimal binding evidence

TF binding + DNase peak

rs930509

   

rs13312736

   

rs7095891

   

rs11003123

   

rs36014597

   

rs10450310

5

Minimal binding evidence

TF binding or DNase peak

rs10824792

   

rs10082466

   

rs35137523

   

rs1838065

   

rs1838066

   

rs34130848

   

rs4935046

   

rs17287498

   

rs17334270

   

rs4647964

   

rs11003124

   

rs11003125

   

rs34130848

   

rs2099902

6

Minimal binding evidence

Motif hit

rs2120131

   

rs1982266

   

rs10824794

   

rs1031101

   
  1. RDB RegulomeDB, TF transcription factor, eQTL expression quantitative trait loci
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