From: Determination of optimal parameters of MAFFT program based on BAliBASE3.0 database
Data set | The optimal substitution matrix | The best MAX_MEAN_SPS value | The optimal GOP | The optimal of GEP |
---|---|---|---|---|
RV11 | Blosum45 | 0.5912 | 2 | 0.12 |
RV12 | Blosum45 | 0.8465 | 2.9 | 1.44 |
RV20 | Blosum62 | 0.8594 | 2.3 | 0.63 |
RV30 | Blosum62 | 0.7819 | 2.1 | 0.72 |
RV40 | Blosum45 | 0.6818 | 2.8 | 0.39 |
RV50 | Blosum45 | 0.7505 | 2.8 | 0.03 |