Comparative analysis of the terpenoid biosynthesis pathway in Azadirachta indica and Melia azedarach by RNA-seq

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Table 1 Alignment statistics of three A. indica samples Y1–Y3

Sample	Y1	Y2	Y3
Raw reads	47,035,150	44,757,094	57,245,842
Clean reads	46,203,176	43,956,038	56,227,214
Clean bases	5,820,550,242	5,537,418,082	7,083,668,168
GC content (%)	43.22	43.19	43.19
≥Q30 (%)	91.89	91.77	91.44

Map to scaffold	Reads number	Percentage	Reads number	Percentage	Reads number	Percentage
Mapped reads	37,542,577	81.26	35,920,248	81.72	46,256,906	82.27
Unique mapped reads	23,258,114	50.34	22,121,124	50.33	28,636,295	50.93
Multiple mapped reads	14,284,463	30.92	13,799,124	31.39	17,620,611	31.34