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Table 2 Definitions of “strain” in BioPortal ontologies referring to the microbiological concept

From: An Information System for European culture collections: the way forward

Ontology

Code

Definition

Experimental Factor Ontology (EFO)

EFO_0005135

A population of organisms that is genetically different from others of the same species and possessing a set of defined characteristics

Semanticscience Integrated Ontology (SIO)

SIO_010055

A strain is a genetic variant or kind of microorganism

Microbial Culture Collection Vocabulary (MCVV)

MCCV_000002

Straina

  1. aMCVV is a very limited ontology, including 16 concepts only