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Table 2 Subtype characterizations of four genomic fragments from HIV-infected population in Suzhou and Suqian, Jiangsu

From: HIV-1 diversity in infected individuals in Suzhou and Suqian, China

Specimen

p17

pol

vif-env

c2v3

Totala

11jssq001

C

CRF08_BC

NA

C

CRF08_BC

11jssqHS002

CRF01_AE

CRF01_AE

CRF01_AE

NA

CRF01_AE

11jssqHS013

CRF01_AE

CRF01_AE

NA

CRF01_AE

CRF01_AE

11jssqIDU011

NA

NA

CRF07_BC

B/C

B/C

11jssqMSM003

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

11jssqMSM004

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

11jssqMSM006

C

CRF08_BC

NA

NA

CRF08_BC

11jssqMSM007

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

11jssqMSM009

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

11jssqMSM010

C

CRF07_BC

CRF07_BC

C

CRF07_BC

11jssqMSM014

NA

CRF01_AE/B

NA

CRF01_AE

CRF01_AE/B

12jssz001

C

CRF07_BC

CRF07_BC

C

CRF07_BC

12jsszHS002

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

12jsszHS004

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

12jsszHS005

C

CRF07_BC

NA

C

CRF07_BC

12jsszHS008

CRF01_AE

CRF01_AE

CRF01_AE

NA

CRF01_AE

12jsszHS011

CRF01_AE

NA

CRF01_AE

CRF01_AE

CRF01_AE

12jsszHS012

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

12jsszHS013

C

B/C

CRF07_BC

CRF01_AE

CRF01_AE/B/C

12jsszHS016

C

CRF07_BC

CRF07_BC

C

CRF07_BC

12jsszHS018

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

12jsszHS019

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

12jsszHS020

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

12jsszHS021

B

B

B

CRF01_AE

CRF01_AE/B

12jsszHS022

C

CRF08_BC

C

C

CRF08_BC

12jsszHS023

CRF01_AE

CRF01_AE

CRF01_AE/B

CRF01_AE

CRF01_AE/B

12jsszHS024

C

CRF07_BC

CRF07_BC

C

CRF07_BC

12jsszMSM003

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

12jsszMSM006

C

CRF07_BC

CRF07_BC

C

CRF07_BC

12jsszMSM009

CRF01_AE

CRF01_AE

NA

CRF01_AE

CRF01_AE

12jsszMSM014

C

CRF07_BC

NA

C

CRF07_BC

12jsszMSM015

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

13jsszIDU017

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

13jsszMSM007

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

CRF01_AE

Total

32

32

27

31

34

  1. If no sequences are available on pol and vif-env, the strains were not taken into account in the statistics
  2. NA not available
  3. aCRF07_BC and CRF08_BC originated by insertion of several short segments of subtype B into the backbone of subtype C. Both CRFs_BC have genomic segments of subtype C origin in p17 and C2V3 region. Therefore, it is unable to distinguish CRF07_BC/CRF08_BC from subtype C in the phylogenetic trees of p17 and C2V3. Therefore, the genomic segments (i.e. pol and vif-env) including recombination breakpoints are used as major determinants for identification of CRF07_BC or CRF08_BC