Fig. 9
From: A putative HIV-1 subtype C/CRF11_cpx unique recombinant from South Africa
a REGA HIV subtype recombination bootscan pattern of the pol sequence of 08MB26ZA. The bootscan analysis shows the following patterns: Segment (1) nucleotide position 2252–3192 is assigned to subtype J with 98 % bootstrap confidence; segment (2) nucleotide position 3192–3512 is assigned to subtype G with 91 % bootstrap confidence; section (3) nucleotide position 3512–3952 is assigned to subtype J with 86 % bootstrap confidence; and section (4) nucleotide position 4312–4792 is assigned to subtype C with 92 % bootstrap confidence. b REGA HIV-1 subtype/CRF recombination analysis of the pol sequence of 08MB26ZA. Segment (1) nucleotide position 2252–3952 is assigned to HIV-1 CRF 11_CPX with a bootstrap support of 100 %; segment (2) nucleotide position 4312–4792 is assigned to HIV-1 subtype C with a bootstrap support of 89 %