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Table 5 Selected non-covalent interactions among drugs D1–D4 and TYMS obtained via flexible docking

From: Non-covalent interactions involving halogenated derivatives of capecitabine and thymidylate synthase: a computational approach

Systems

Contacts

Bond type

Bond distances (Ã…)

Systems

Contacts

Bond Type

Bond distances (Ã…)

D1-TYMS

O–H–O Arg78

Hydrogen

2.43

D3-TYMS

O–H–N Lys77

Hydrogen

2.44

 

O–H–N Phe80

Hydrogen

2.00

 

O–O Arg78

Donor

3.00

 

alkyl–alkyl Ile108

Alkyl

4.21.5.26

 

C–H–O Arg78

Carbon

2.43

 

alkyl-Ï€ Trp109

Alkyl-Ï€

4.20,4.29

 

O–H-N Phe80

Hydrogen

2.90

 

F–O Leu221

Halogen

2.82

 

Br–alkyl Ile108

Alkyl

5.09

 

alkyl–alkyl Leu221

Alkyl

4.61,5.32

 

Alkyl-Ï€ Trp109

Alkyl-Ï€

3.83, 4.81

 

F–H–C Gly222

Carbon

3.26

 

N–H–O Leu221

Hydrogen

2.67

 

F–C–π Phe225

Alkyl-Ï€

4.54

 

O–H–C Gly222

Carbon

2.58

 

C–C–S Met309

Alkyl

4.79

 

π–π Phe225

Ï€ stack

5.41

     

O–H–O Ile307

Hydrogen

2.53

     

C–H–O Ile307

Carbon

2.79

D2-TYMS

O–H–N Lys77

Hydrogen

2.21

D4-TYMS

O–H–N Lys77

hydrogen

2.48

 

O–O Arg78

Donor

2.92

 

C–H–O Arg78

Carbon

2.35

 

C-H–O Arg78

Carbon

2.46

 

O–H–N Phe80

Hydrogen

2.93

 

O–H–N Phe80

Hydrogen

2.80

 

I-alkyl Ile108

Alkyl

5.18

 

C–H–π Phe80

Alkyl- π

5.05

 

C–H–π Trp109

Alkyl-Ï€

2.42, 4.33

 

Alkyl–alkyl Ile108

Alkyl

4.77

 

Alkyl–alkyl

Alkyl

5.09

 

C–H–π Trp109

Alkyl- π

2.52, 4.35

 

Leu221

carbon

2.54

 

Cl–O Leu221

Halogen

2.00

 

C–H–O Gly222

Ï€ stack

5.42

 

O–H–C Gly222

Carbon

2.60

 

π–π Phe225

Hydrogen

2.18, 1.97

 

π–π Phe225

Ï€ stack

5.16

 

O–H–O Ile307

  
 

O–H–O Ile307

Hydrogen

2.18, 2.34

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