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Table 4 Comparison between the non-covalent interactions between Capecitabine and TYMS from flexible and rigid docking

From: Non-covalent interactions involving halogenated derivatives of capecitabine and thymidylate synthase: a computational approach

Systems

Non-covalent interactions

Flexible docking

Rigid docking

Contacts

Bonding type

Bond distance (Ã…)

Contacts

Bonding type

Bond distance (Ã…)

Capecitabine- TYMS

O–H–O Arg78

Hydrogen

2.31

O–H–N Val62

Hydrogen

3.05

 

O–H–C Val79

Carbon

2.67

C–C–S Cys180

Alkyl

3.61

 

O–H–N Phe80

Hydrogen

2.83

Alkyl–alkyl Leu198

Alkyl

3.69

 

O–H–C Ile108

Carbon

2.80

F–C–O Gly211

Halogen

3.35

 

Alkyl-Ï€ Ile108

Alkyl-Ï€

5.45

F–O Leu212

Halogen

2.85

 

Alkyl-Ï€ Leu221

Alkyl-Ï€

4.47

F–H–C Tyr213

Carbon

2.84

 

F–O Leu221

Halogen

3.26

C–H–O Leu252

Carbon

2.87

 

F–H–C Gly222

Carbon

2.35

   
 

Alkyl-Ï€ Phe225

Alkyl-Ï€

4.71

   
 

F–C–π Phe225

Alkyl-Ï€

4.43

   
 

C–C–S Met309

Alkyl

4.88

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