US-like isolates of porcine epidemic diarrhea virus from Japanese outbreaks between 2013 and 2014

Van Diep, Nguyen; Norimine, Junzo; Sueyoshi, Masuo; Lan, Nguyen Thi; Hirai, Takuya; Yamaguchi, Ryoji

doi:10.1186/s40064-015-1552-z

SpringerPlus

Table 1 Names and accession numbers of vaccine strains and Japanese field isolates with distinct sequences of the partial S gene and ORF3 gene in this study

From: US-like isolates of porcine epidemic diarrhea virus from Japanese outbreaks between 2013 and 2014

No.	Name of isolates	Age group	Sample origin	Collection time	Geographic origin	Partial S gene	ORF3 gene
1	14JM-01^a	Suckling	Small intestine	2014/March	Miyazaki	KT968486	KT968511
2	14JM-07	Suckling	Small intestine	2014/April	Miyazaki	KT968487	*
3	14JM-23^b	Suckling	Small intestine	2014/April	Aichi	KT968488	*
4	14JM-29	Suckling	Feces	2014/April	Aichi	KT968490	*
5	14JM-55	Suckling	Feces	2014/April	Akita	KT968489	*
6	14JM-69	Suckling	Feces	2014/April	Miyazaki	KT968493	*
7	14JM-73	Suckling	Feces	2014/April	Miyazaki	KT968494	*
8	14JM-128^d	Suckling	Intestinal content	2013/December	Miyazaki	KT968492	*
9	14JM-140^f	Suckling	Intestinal content	2014/March	Miyazaki	KT968496	*
10	14JM-143	Suckling	Intestinal content	2014/February	Miyazaki	KT968497	*
11	14JM-144	Suckling	Intestinal content	2014/March	Miyazaki	KT968498	*
12	14JM-152^g	Suckling	Small intestine	2014/March	Miyazaki	KT968500	*
13	14JM-157^e	Suckling	Feces	2014/May	Aichi	KT968495	*
14	14JM-168	Suckling	Feces	2014/May	Aomori	KT968499	*
15	14JM-204^c	Suckling	Feces	2014/June	Hokkaido	KT968491	KT968513
16	14JM-235	Suckling	Feces	2014/June	Miyazaki	KT968505	*
17	14JM-236	Suckling	Feces	2014/July	Miyazaki	KT968501	*
18	14JM-238	Suckling	Feces	2014/June	Miyazaki	KT968506	KT968514
19	14JM-239	Suckling	Feces	2014/July	Miyazaki	KT968507	*
20	14JM-242	Suckling	Feces	2014/May	Miyazaki	KT968502	*
21	14JM-248	Suckling	Feces	2014/January	Miyazaki	KT968503	*
22	14JM-278	Suckling	Feces	2014/February	Miyazaki	KT968508	KT968515
23	14JM-293^h	Suckling	Feces	2013/December	Kagoshima	KT968504	*
24	14JM-40	Suckling	Feces	2014/April	Hokkaido		KT968512
25	14JM-295^a	Suckling	Feces	2014/January	Kagoshima		KT968516
26	14JM-02^a	Suckling	Small intestine	2014/March	Miyazaki
27	14JM-12^a	Suckling	Small intestine	2014/April	Miyazaki
28	14JM-19^a	Sow	Feces	2014/April	Miyazaki
29	14JM-34^a	Sow	Feces	2014/April	Aichi
30	14JM-46^a	Suckling	Intestinal content	2014/April	Miyazaki
31	14JM-48^a	Suckling	Intestinal content	2014/April	Miyazaki
32	14JM-63^a	Sow	Feces	2014/April	Miyazaki
33	14JM-65^a	Sow	Feces	2014/April	Miyazaki
34	14JM-117^a	Suckling	Small intestine	2014/April	Miyazaki
35	14JM-118^a	Suckling	Small intestine	2014/March	Miyazaki
36	14JM-119^a	Suckling	Feces	2014/April	Miyazaki
37	14JM-120^a	Suckling	Feces	2014/April	Miyazaki
38	14JM-121^a	Suckling	Feces	2014/May	Miyazaki
39	14JM-122^a	Suckling	Feces	2014/March	Miyazaki
40	14JM-123^a	Suckling	Feces	2014/March	Miyazaki
41	14JM-124^a	Suckling	Feces	2014/March	Miyazaki
42	14JM-125^a	Suckling	Feces	2014/March	Miyazaki
43	14JM-126^a	Suckling	Feces	2014/March	Miyazaki
44	14JM-127^a	Suckling	Feces	2013/December	Miyazaki
45	14JM-129^a	Suckling	Feces	2014/January	Aichi
46	14JM-130^a	Suckling	Feces	2014/January	Aichi
47	14JM-131^a	Suckling	Feces	2014/February	Aichi
48	14JM-132^a	Suckling	Feces	2014/January	Aichi
49	14JM-133^a	Suckling	Feces	2014/January	Aichi
50	14JM-134^a	Suckling	Feces	2014/February	Miyazaki
51	14JM-135^a	Suckling	Feces	2014/January	Miyazaki
52	14JM-136^a	Suckling	Feces	2013/December	Miyazaki
53	14JM-137^a	Suckling	Feces	2014/January	Miyazaki
54	14JM-139^a	Suckling	Feces	2014/March	Miyazaki
55	14JM-141^a	Suckling	Feces	2014/April	Miyazaki
56	14JM-142^a	Suckling	Feces	2014/March	Miyazaki
57	14JM-145^a	Suckling	Feces	2014/April	Miyazaki
58	14JM-146^a	Suckling	Feces	2014/April	Miyazaki
59	14JM-147^a	Suckling	Feces	2014/May	Miyazaki
60	14JM-149^a	Suckling	Feces	2014/April	Miyazaki
61	14JM-150^a	Suckling	Feces	2014/March	Miyazaki
62	14JM-151^a	Suckling	Feces	2014/March	Miyazaki
63	14JM-153^a	Suckling	Feces	2014/March	Aomori
64	14JM-154^a	Suckling	Feces	2014/April	Aomori
65	14JM-174^a	Suckling	Feces	2014/May	Aomori		*
66	14JM-24^b	Suckling	Feces	2014/April	Aichi
67	14JM-37^c	Suckling	Feces	2014/April	Hokkaido		*
68	14JM-45^c	Suckling	Feces	2014/April	Hokkaido
69	14JM-203^c	Suckling	Feces	2014/June	Hokkaido
70	14JM-56^d	Suckling	Feces	2014/April	Aomori
71	14JM-60^e	Suckling	Feces	2014/April	Aomori
72	14JM-138^f	Suckling	Feces	2014/March	Miyazaki
73	14JM-162^b	Suckling	Feces	2014/May	Aichi
74	14JM-179^e	Suckling	Feces	2014/May	Aomori
75	14JM-200^g	Suckling	Feces	2014/May	Miyazaki
76	14JM-210^b	Suckling	Intestinal content	2014/July	Aichi
77	14JM-226^h	Suckling	Feces	2014/July	Kagoshima		*
78	14JM-229^h	Suckling	Intestinal	2014/July	Kagoshima
79	14JM-230^h	Suckling	Intestinal	2014/July	Kagoshima
80	14JM-252^g	Suckling	Feces	2014/March	Miyazaki
81	P5-V		Nisseiken Co.			KT968509	KT968517
82	P6P4C6		Kakatsuken Co.			KT968510	KT968518

* PEDV isolates that the sequences of ORF3 gene was identical to that of the isolate 14JM-01
“a, b, c, d, e, f, g, h”: PEDV isolates having the same the letter have the same sequence of the partial S gene

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