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Table 1 Names and accession numbers of vaccine strains and Japanese field isolates with distinct sequences of the partial S gene and ORF3 gene in this study

From: US-like isolates of porcine epidemic diarrhea virus from Japanese outbreaks between 2013 and 2014

No.

Name of isolates

Age group

Sample origin

Collection time

Geographic origin

Partial S gene

ORF3 gene

1

14JM-01a

Suckling

Small intestine

2014/March

Miyazaki

KT968486 

KT968511

2

14JM-07

Suckling

Small intestine

2014/April

Miyazaki

KT968487

*

3

14JM-23b

Suckling

Small intestine

2014/April

Aichi

KT968488

*

4

14JM-29

Suckling

Feces

2014/April

Aichi

KT968490

*

5

14JM-55

Suckling

Feces

2014/April

Akita

KT968489

*

6

14JM-69

Suckling

Feces

2014/April

Miyazaki

KT968493

*

7

14JM-73

Suckling

Feces

2014/April

Miyazaki

KT968494

*

8

14JM-128d

Suckling

Intestinal content

2013/December

Miyazaki

KT968492

*

9

14JM-140f

Suckling

Intestinal content

2014/March

Miyazaki

KT968496

*

10

14JM-143

Suckling

Intestinal content

2014/February

Miyazaki

KT968497

*

11

14JM-144

Suckling

Intestinal content

2014/March

Miyazaki

KT968498

*

12

14JM-152g

Suckling

Small intestine

2014/March

Miyazaki

KT968500

*

13

14JM-157e

Suckling

Feces

2014/May

Aichi

KT968495

*

14

14JM-168

Suckling

Feces

2014/May

Aomori

KT968499

*

15

14JM-204c

Suckling

Feces

2014/June

Hokkaido

KT968491 

KT968513

16

14JM-235

Suckling

Feces

2014/June

Miyazaki

KT968505

*

17

14JM-236

Suckling

Feces

2014/July

Miyazaki

KT968501

*

18

14JM-238

Suckling

Feces

2014/June

Miyazaki

KT968506 

KT968514

19

14JM-239

Suckling

Feces

2014/July

Miyazaki

KT968507

*

20

14JM-242

Suckling

Feces

2014/May

Miyazaki

KT968502

*

21

14JM-248

Suckling

Feces

2014/January

Miyazaki

KT968503

*

22

14JM-278

Suckling

Feces

2014/February

Miyazaki

KT968508 

KT968515

23

14JM-293h

Suckling

Feces

2013/December

Kagoshima

KT968504

*

24

14JM-40

Suckling

Feces

2014/April

Hokkaido

 

KT968512

25

14JM-295a

Suckling

Feces

2014/January

Kagoshima

 

KT968516

26

14JM-02a

Suckling

Small intestine

2014/March

Miyazaki

  

27

14JM-12a

Suckling

Small intestine

2014/April

Miyazaki

  

28

14JM-19a

Sow

Feces

2014/April

Miyazaki

  

29

14JM-34a

Sow

Feces

2014/April

Aichi

  

30

14JM-46a

Suckling

Intestinal content

2014/April

Miyazaki

  

31

14JM-48a

Suckling

Intestinal content

2014/April

Miyazaki

  

32

14JM-63a

Sow

Feces

2014/April

Miyazaki

  

33

14JM-65a

Sow

Feces

2014/April

Miyazaki

  

34

14JM-117a

Suckling

Small intestine

2014/April

Miyazaki

  

35

14JM-118a

Suckling

Small intestine

2014/March

Miyazaki

  

36

14JM-119a

Suckling

Feces

2014/April

Miyazaki

  

37

14JM-120a

Suckling

Feces

2014/April

Miyazaki

  

38

14JM-121a

Suckling

Feces

2014/May

Miyazaki

  

39

14JM-122a

Suckling

Feces

2014/March

Miyazaki

  

40

14JM-123a

Suckling

Feces

2014/March

Miyazaki

  

41

14JM-124a

Suckling

Feces

2014/March

Miyazaki

  

42

14JM-125a

Suckling

Feces

2014/March

Miyazaki

  

43

14JM-126a

Suckling

Feces

2014/March

Miyazaki

  

44

14JM-127a

Suckling

Feces

2013/December

Miyazaki

  

45

14JM-129a

Suckling

Feces

2014/January

Aichi

  

46

14JM-130a

Suckling

Feces

2014/January

Aichi

  

47

14JM-131a

Suckling

Feces

2014/February

Aichi

  

48

14JM-132a

Suckling

Feces

2014/January

Aichi

  

49

14JM-133a

Suckling

Feces

2014/January

Aichi

  

50

14JM-134a

Suckling

Feces

2014/February

Miyazaki

  

51

14JM-135a

Suckling

Feces

2014/January

Miyazaki

  

52

14JM-136a

Suckling

Feces

2013/December

Miyazaki

  

53

14JM-137a

Suckling

Feces

2014/January

Miyazaki

  

54

14JM-139a

Suckling

Feces

2014/March

Miyazaki

  

55

14JM-141a

Suckling

Feces

2014/April

Miyazaki

  

56

14JM-142a

Suckling

Feces

2014/March

Miyazaki

  

57

14JM-145a

Suckling

Feces

2014/April

Miyazaki

  

58

14JM-146a

Suckling

Feces

2014/April

Miyazaki

  

59

14JM-147a

Suckling

Feces

2014/May

Miyazaki

  

60

14JM-149a

Suckling

Feces

2014/April

Miyazaki

  

61

14JM-150a

Suckling

Feces

2014/March

Miyazaki

  

62

14JM-151a

Suckling

Feces

2014/March

Miyazaki

  

63

14JM-153a

Suckling

Feces

2014/March

Aomori

  

64

14JM-154a

Suckling

Feces

2014/April

Aomori

  

65

14JM-174a

Suckling

Feces

2014/May

Aomori

 

*

66

14JM-24b

Suckling

Feces

2014/April

Aichi

  

67

14JM-37c

Suckling

Feces

2014/April

Hokkaido

 

*

68

14JM-45c

Suckling

Feces

2014/April

Hokkaido

  

69

14JM-203c

Suckling

Feces

2014/June

Hokkaido

  

70

14JM-56d

Suckling

Feces

2014/April

Aomori

  

71

14JM-60e

Suckling

Feces

2014/April

Aomori

  

72

14JM-138f

Suckling

Feces

2014/March

Miyazaki

  

73

14JM-162b

Suckling

Feces

2014/May

Aichi

  

74

14JM-179e

Suckling

Feces

2014/May

Aomori

  

75

14JM-200g

Suckling

Feces

2014/May

Miyazaki

  

76

14JM-210b

Suckling

Intestinal content

2014/July

Aichi

  

77

14JM-226h

Suckling

Feces

2014/July

Kagoshima

 

*

78

14JM-229h

Suckling

Intestinal

2014/July

Kagoshima

  

79

14JM-230h

Suckling

Intestinal

2014/July

Kagoshima

  

80

14JM-252g

Suckling

Feces

2014/March

Miyazaki

  

81

P5-V

 

Nisseiken Co.

  

KT968509

KT968517

82

P6P4C6

 

Kakatsuken Co.

  

KT968510

KT968518

  1. * PEDV isolates that the sequences of ORF3 gene was identical to that of the isolate 14JM-01
  2. “a, b, c, d, e, f, g, h”: PEDV isolates having the same the letter have the same sequence of the partial S gene