Microbial community profiles of the colon from steers differing in feed efficiency

Myer, Phillip R; Wells, James E; Smith, Timothy P L; Kuehn, Larry A; Freetly, Harvey C

doi:10.1186/s40064-015-1201-6

SpringerPlus

Table 3 Relative abundance of significant OTUs in the four feed efficiency groups

From: Microbial community profiles of the colon from steers differing in feed efficiency

OTU ID	Classification	Percentage of total sequences^a				SEM	P value^b	No. of steers with detectable taxon^c
OTU ID	Classification	ADG_High–ADFI_High	ADG_High–ADFI_Low	ADG_Low–ADFI_Low	ADG_Low–ADFI_High	SEM	P value^b	No. of steers with detectable taxon^c
denovo26989	Bacteroides	0.0163	0.0026	0.0013	0.0040	0.0034	0.0475	17
denovo77346	Blautia	0.0028	0.0003	0.0007	0.0014	0.0006	0.0499	19
denovo8562	Butyrivibrio	0.0003	0.0021	0.0009	0.0029	0.0004	0.0240	20
denovo24149	Butyrivibrio	0.0003	0.0016	0.0005	0.0018	0.0004	0.0471	16
denovo8243	Clostridium	0.0298	0.0018	0.0022	0.0009	0.0066	0.0446	23
denovo8936	Coprococcus	0.0063	0.0017	0.0011	0.0010	0.0009	0.0323	15
denovo67746	Coprococcus	0.0061	0.0014	0.0029	0.0009	0.0011	0.0441	19
denovo33574	Dorea	0.0001	0.0010	0.0010	0.0025	0.0003	0.0225	18
denovo12537	Family Bacteroidaceae	0.0001	0.0019	0.0009	0.0013	0.0004	0.0500	15
denovo66919	Family Christensenellaceae	0.0043	0.0086	0.0030	0.0015	0.0014	0.0442	23
denovo66901	Family Christensenellaceae	0.0021	0.0121	0.0109	0.0029	0.0024	0.0463	18
denovo28680	Family Clostridiaceae	0.0086	0.0010	0.0016	0.0019	0.0017	0.0460	19
denovo23600	Family Lachnospiraceae	0.0641	0.0126	0.0175	0.0210	0.0086	0.0279	29
denovo25904	Family Lachnospiraceae	0.0018	0.0023	0.0039	0.0009	0.0006	0.0472	23
denovo67326	Family Lachnospiraceae	0.0024	0.0005	0.0012	0.0005	0.0004	0.0482	16
denovo43262	Family Lachnospiraceae	0.0084	0.0008	0.0025	0.0010	0.0018	0.0487	17
denovo6452	Family Lachnospiraceae	1.5328	0.1368	0.1559	0.0641	0.3227	0.0495	30
denovo37795	Family Lachnospiraceae	0.0021	0.0016	0.0007	0.0039	0.0007	0.0496	21
denovo25335	Family Lachnospiraceae	0.0085	0.0028	0.0022	0.0028	0.0017	0.0499	23
denovo13622	Family Peptostreptococcaceae	0.0001	0.0019	0.0013	0.0011	0.0004	0.0499	16
denovo34577	Family Rikenellaceae	0.0009	0.0067	0.0384	0.0033	0.0077	0.0485	18
denovo11639	Family Rikenellaceae	0.0155	0.0367	0.0567	0.0185	0.0104	0.0497	26
denovo50904	Family Ruminococcaceae	0.0013	0.0063	0.0033	0.0005	0.0007	0.0029	20
denovo53814	Family Ruminococcaceae	0.0045	0.0011	0.0013	0.0008	0.0006	0.0246	19
denovo11996	Family Ruminococcaceae	0.0004	0.0004	0.0019	0.0004	0.0003	0.0387	15
denovo43427	Family Ruminococcaceae	0.0044	0.0010	0.0022	0.0009	0.0007	0.0416	20
denovo6911	Family Ruminococcaceae	0.0061	0.0011	0.0014	0.0018	0.0010	0.0421	22
denovo71254	Family Ruminococcaceae	0.1496	0.5316	0.4293	0.2538	0.0697	0.0440	30
denovo9573	Family Ruminococcaceae	0.0023	0.0076	0.0133	0.0044	0.0019	0.0445	21
denovo19097	Family Ruminococcaceae	0.0024	0.0160	0.0135	0.0075	0.0028	0.0447	26
denovo30835	Family Ruminococcaceae	0.0005	0.0010	0.0021	0.0003	0.0004	0.0448	15
denovo46467	Family Ruminococcaceae	0.0023	0.0320	0.0111	0.0033	0.0062	0.0458	20
denovo38547	Family Ruminococcaceae	0.0103	0.0078	0.0051	0.0019	0.0017	0.0459	27
denovo359	Family Ruminococcaceae	0.0345	0.0047	0.0100	0.0124	0.0065	0.0466	27
denovo19227	Family Ruminococcaceae	0.0006	0.0034	0.0029	0.0016	0.0006	0.0470	22
denovo38238	Family Ruminococcaceae	0.3534	0.8847	0.6177	0.6599	0.1075	0.0476	30
denovo25283	Family Ruminococcaceae	0.0228	0.0595	0.0320	0.0288	0.0078	0.0478	29
denovo67138	Family Ruminococcaceae	0.0105	0.0015	0.0023	0.0030	0.0020	0.0478	18
denovo39456	Family Ruminococcaceae	0.0011	0.0056	0.0016	0.0016	0.0008	0.0479	21
denovo41445	Family Ruminococcaceae	0.0025	0.0125	0.0049	0.0009	0.0023	0.0479	23
denovo16744	Family Ruminococcaceae	0.0019	0.0072	0.0031	0.0016	0.0012	0.0479	20
denovo69598	Family Ruminococcaceae	0.0008	0.0050	0.0016	0.0013	0.0009	0.0486	16
denovo21045	Family Ruminococcaceae	0.0043	0.0035	0.0012	0.0009	0.0008	0.0487	19
denovo21464	Family Ruminococcaceae	0.0020	0.0013	0.0068	0.0016	0.0012	0.0492	17
denovo59669	Family Ruminococcaceae	0.2908	0.2518	0.1567	0.0961	0.0449	0.0492	30
denovo44398	Family Ruminococcaceae	0.0034	0.0094	0.0184	0.0051	0.0033	0.0492	20
denovo70020	Family Ruminococcaceae	0.0008	0.0115	0.0065	0.0038	0.0025	0.0499	18
denovo37453	Order Bacteroidales	0.0040	0.0004	0.0008	0.0010	0.0006	0.0433	15
denovo46578	Order Bacteroidales	0.0018	0.1288	0.0686	0.0301	0.0264	0.0469	19
denovo19773	Order Bacteroidales	0.0126	0.0024	0.0028	0.0053	0.0022	0.0473	22
denovo72787	Order Bacteroidales	0.0184	0.0018	0.0042	0.0073	0.0035	0.0475	16
denovo8377	Order Bacteroidales	0.0043	0.0006	0.0013	0.0011	0.0008	0.0482	18
denovo29245	Order Bacteroidales	0.0069	0.0005	0.0011	0.0029	0.0016	0.0499	16
denovo40203	Order Clostridiales	0.0048	0.0006	0.0006	0.0008	0.0008	0.0264	16
denovo23255	Order Clostridiales	0.0011	0.0038	0.0015	0.0054	0.0008	0.0414	23
denovo75811	Order Clostridiales	0.0019	0.0021	0.0036	0.0068	0.0010	0.0454	27
denovo70498	Order Clostridiales	0.0018	0.0075	0.0060	0.0020	0.0013	0.0480	19
denovo13252	Order Clostridiales	0.0049	0.0103	0.0078	0.0149	0.0021	0.0485	29
denovo40361	Order Clostridiales	0.0054	0.0009	0.0021	0.0015	0.0010	0.0498	15
denovo60620	Order Clostridiales	0.0025	0.0077	0.0042	0.0015	0.0013	0.0499	21
denovo40059	Order Clostridiales	0.0008	0.0021	0.0018	0.0004	0.0005	0.0499	16
denovo18789	Order Clostridiales	0.0019	0.0066	0.0023	0.0071	0.0013	0.0499	25
denovo43715	Order Clostridiales	0.0185	0.0052	0.0080	0.0110	0.0032	0.0500	29
denovo51765	Oscillospira	0.0025	0.0046	0.0134	0.0041	0.0022	0.0456	25
denovo26903	Prevotella	0.0050	0.0017	0.0027	0.0179	0.0030	0.0435	28
denovo23534	Prevotella copri	0.0230	0.0011	0.0051	0.0033	0.0049	0.0483	17
denovo60154	Pseudobutyrivibrio	0.0064	0.0007	0.0017	0.0025	0.0012	0.0476	21
denovo45407	Treponema	0.0010	0.0237	0.0161	0.0049	0.0049	0.0477	21

^aData is shown as LSMeans.
^b P values indicate groups that differ (P < 0.05).
^cPercentage of total sequences for steers with nondetectable OTUs were treated as 0.001%, and all data are defined as OTUs that are present in at least 50% of the samples.

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