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Table 3 Relative abundance of significant OTUs in the four feed efficiency groups

From: Microbial community profiles of the colon from steers differing in feed efficiency

OTU ID Classification Percentage of total sequencesa SEM P valueb No. of steers with detectable taxonc
ADGHigh–ADFIHigh ADGHigh–ADFILow ADGLow–ADFILow ADGLow–ADFIHigh
denovo26989 Bacteroides 0.0163 0.0026 0.0013 0.0040 0.0034 0.0475 17
denovo77346 Blautia 0.0028 0.0003 0.0007 0.0014 0.0006 0.0499 19
denovo8562 Butyrivibrio 0.0003 0.0021 0.0009 0.0029 0.0004 0.0240 20
denovo24149 Butyrivibrio 0.0003 0.0016 0.0005 0.0018 0.0004 0.0471 16
denovo8243 Clostridium 0.0298 0.0018 0.0022 0.0009 0.0066 0.0446 23
denovo8936 Coprococcus 0.0063 0.0017 0.0011 0.0010 0.0009 0.0323 15
denovo67746 Coprococcus 0.0061 0.0014 0.0029 0.0009 0.0011 0.0441 19
denovo33574 Dorea 0.0001 0.0010 0.0010 0.0025 0.0003 0.0225 18
denovo12537 Family Bacteroidaceae 0.0001 0.0019 0.0009 0.0013 0.0004 0.0500 15
denovo66919 Family Christensenellaceae 0.0043 0.0086 0.0030 0.0015 0.0014 0.0442 23
denovo66901 Family Christensenellaceae 0.0021 0.0121 0.0109 0.0029 0.0024 0.0463 18
denovo28680 Family Clostridiaceae 0.0086 0.0010 0.0016 0.0019 0.0017 0.0460 19
denovo23600 Family Lachnospiraceae 0.0641 0.0126 0.0175 0.0210 0.0086 0.0279 29
denovo25904 Family Lachnospiraceae 0.0018 0.0023 0.0039 0.0009 0.0006 0.0472 23
denovo67326 Family Lachnospiraceae 0.0024 0.0005 0.0012 0.0005 0.0004 0.0482 16
denovo43262 Family Lachnospiraceae 0.0084 0.0008 0.0025 0.0010 0.0018 0.0487 17
denovo6452 Family Lachnospiraceae 1.5328 0.1368 0.1559 0.0641 0.3227 0.0495 30
denovo37795 Family Lachnospiraceae 0.0021 0.0016 0.0007 0.0039 0.0007 0.0496 21
denovo25335 Family Lachnospiraceae 0.0085 0.0028 0.0022 0.0028 0.0017 0.0499 23
denovo13622 Family Peptostreptococcaceae 0.0001 0.0019 0.0013 0.0011 0.0004 0.0499 16
denovo34577 Family Rikenellaceae 0.0009 0.0067 0.0384 0.0033 0.0077 0.0485 18
denovo11639 Family Rikenellaceae 0.0155 0.0367 0.0567 0.0185 0.0104 0.0497 26
denovo50904 Family Ruminococcaceae 0.0013 0.0063 0.0033 0.0005 0.0007 0.0029 20
denovo53814 Family Ruminococcaceae 0.0045 0.0011 0.0013 0.0008 0.0006 0.0246 19
denovo11996 Family Ruminococcaceae 0.0004 0.0004 0.0019 0.0004 0.0003 0.0387 15
denovo43427 Family Ruminococcaceae 0.0044 0.0010 0.0022 0.0009 0.0007 0.0416 20
denovo6911 Family Ruminococcaceae 0.0061 0.0011 0.0014 0.0018 0.0010 0.0421 22
denovo71254 Family Ruminococcaceae 0.1496 0.5316 0.4293 0.2538 0.0697 0.0440 30
denovo9573 Family Ruminococcaceae 0.0023 0.0076 0.0133 0.0044 0.0019 0.0445 21
denovo19097 Family Ruminococcaceae 0.0024 0.0160 0.0135 0.0075 0.0028 0.0447 26
denovo30835 Family Ruminococcaceae 0.0005 0.0010 0.0021 0.0003 0.0004 0.0448 15
denovo46467 Family Ruminococcaceae 0.0023 0.0320 0.0111 0.0033 0.0062 0.0458 20
denovo38547 Family Ruminococcaceae 0.0103 0.0078 0.0051 0.0019 0.0017 0.0459 27
denovo359 Family Ruminococcaceae 0.0345 0.0047 0.0100 0.0124 0.0065 0.0466 27
denovo19227 Family Ruminococcaceae 0.0006 0.0034 0.0029 0.0016 0.0006 0.0470 22
denovo38238 Family Ruminococcaceae 0.3534 0.8847 0.6177 0.6599 0.1075 0.0476 30
denovo25283 Family Ruminococcaceae 0.0228 0.0595 0.0320 0.0288 0.0078 0.0478 29
denovo67138 Family Ruminococcaceae 0.0105 0.0015 0.0023 0.0030 0.0020 0.0478 18
denovo39456 Family Ruminococcaceae 0.0011 0.0056 0.0016 0.0016 0.0008 0.0479 21
denovo41445 Family Ruminococcaceae 0.0025 0.0125 0.0049 0.0009 0.0023 0.0479 23
denovo16744 Family Ruminococcaceae 0.0019 0.0072 0.0031 0.0016 0.0012 0.0479 20
denovo69598 Family Ruminococcaceae 0.0008 0.0050 0.0016 0.0013 0.0009 0.0486 16
denovo21045 Family Ruminococcaceae 0.0043 0.0035 0.0012 0.0009 0.0008 0.0487 19
denovo21464 Family Ruminococcaceae 0.0020 0.0013 0.0068 0.0016 0.0012 0.0492 17
denovo59669 Family Ruminococcaceae 0.2908 0.2518 0.1567 0.0961 0.0449 0.0492 30
denovo44398 Family Ruminococcaceae 0.0034 0.0094 0.0184 0.0051 0.0033 0.0492 20
denovo70020 Family Ruminococcaceae 0.0008 0.0115 0.0065 0.0038 0.0025 0.0499 18
denovo37453 Order Bacteroidales 0.0040 0.0004 0.0008 0.0010 0.0006 0.0433 15
denovo46578 Order Bacteroidales 0.0018 0.1288 0.0686 0.0301 0.0264 0.0469 19
denovo19773 Order Bacteroidales 0.0126 0.0024 0.0028 0.0053 0.0022 0.0473 22
denovo72787 Order Bacteroidales 0.0184 0.0018 0.0042 0.0073 0.0035 0.0475 16
denovo8377 Order Bacteroidales 0.0043 0.0006 0.0013 0.0011 0.0008 0.0482 18
denovo29245 Order Bacteroidales 0.0069 0.0005 0.0011 0.0029 0.0016 0.0499 16
denovo40203 Order Clostridiales 0.0048 0.0006 0.0006 0.0008 0.0008 0.0264 16
denovo23255 Order Clostridiales 0.0011 0.0038 0.0015 0.0054 0.0008 0.0414 23
denovo75811 Order Clostridiales 0.0019 0.0021 0.0036 0.0068 0.0010 0.0454 27
denovo70498 Order Clostridiales 0.0018 0.0075 0.0060 0.0020 0.0013 0.0480 19
denovo13252 Order Clostridiales 0.0049 0.0103 0.0078 0.0149 0.0021 0.0485 29
denovo40361 Order Clostridiales 0.0054 0.0009 0.0021 0.0015 0.0010 0.0498 15
denovo60620 Order Clostridiales 0.0025 0.0077 0.0042 0.0015 0.0013 0.0499 21
denovo40059 Order Clostridiales 0.0008 0.0021 0.0018 0.0004 0.0005 0.0499 16
denovo18789 Order Clostridiales 0.0019 0.0066 0.0023 0.0071 0.0013 0.0499 25
denovo43715 Order Clostridiales 0.0185 0.0052 0.0080 0.0110 0.0032 0.0500 29
denovo51765 Oscillospira 0.0025 0.0046 0.0134 0.0041 0.0022 0.0456 25
denovo26903 Prevotella 0.0050 0.0017 0.0027 0.0179 0.0030 0.0435 28
denovo23534 Prevotella copri 0.0230 0.0011 0.0051 0.0033 0.0049 0.0483 17
denovo60154 Pseudobutyrivibrio 0.0064 0.0007 0.0017 0.0025 0.0012 0.0476 21
denovo45407 Treponema 0.0010 0.0237 0.0161 0.0049 0.0049 0.0477 21
  1. aData is shown as LSMeans.
  2. b P values indicate groups that differ (P < 0.05).
  3. cPercentage of total sequences for steers with nondetectable OTUs were treated as 0.001%, and all data are defined as OTUs that are present in at least 50% of the samples.