Table 2 Predicted conserved motifs in 15 putative promoters of T. pseudonana genes
From: Phylogenetic analysis of methionine synthesis genes from Thalassiosira pseudonana
Gene | Protein ID | Length | Start | p value | Sites | ||
|---|---|---|---|---|---|---|---|
Aspartate kinase | 269371 | 500 | 232 | 1.31e−05 | GATGCTCACG |
| TCTCGCCATG |
Aspartate semialdehyde dehydrogenase | 32577 | 500 | 114 | 5.43e−05 | GGCCATTGTG |
| GGTAAAAAAG |
Cystathionine β-lyase-like | 269520 | 1,000 | 780 | 1.32e−07 | GGAGAAGAGG |
| AAGGTCGTGT |
Cystathionine γ-synthase-like | 9830 | 500 | 45 | 3.82e−05 | GAGGGCGGAG |
| GCCCTCTCTC |
Homoserine acetyltransferase | 12141 | 700 | 64 | 8.59e−06 | AAGAGGCTTC |
| CGACGACAGA |
Homoserine dehydrogenase | 29144 | 300 | 60 | 4.12e−05 | ACAACTGAAC |
| CTTGGTGTGC |
Homoserine dehydrogenase | 40655 | 500 | 332 | 1.72e−06 | TCCTTTGCGT |
| CTTGATGTAT |
Homoserine dehydrogenase | 24587 | 300 | 154 | 3.92e−06 | GTTAGTTGTT |
| TTGGTTTGCT |
Homoserine kinase | 28592 | 1,000 | 81 | 2.85e−07 | CCATATCTTT |
| TTTCGATCGA |
Methionine synthase | 693 | 1,000 | 36 | 4.39e−07 | CGTCGACAGA |
| CTGAAACAGA |
Methionine γ-lyase-like | 11993 | 700 | 323 | 6.40e−06 | GCGTTGACAT |
| GCCTCATGTC |
SAM synthetase | 21815 | 500 | 336 | 9.81e−06 | AACGTGCCTC |
| CTGGTATGGT |
SAM synthetase | 39946 | 300 | 152 | 1.04e−05 | ACCATTGTTT |
| GGGTAACAGC |
Glutamylcysteine synthetase | 13064 | 1,000 | 4 | 3.29e−05 | GTG |
| TGCTTTTCGG |
Glutathione synthetase | 29212 | 1,000 | 700 | 3.41e−05 | GCTTCATGAG |
| GTGTTTGGAG |
