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Table 2 Predicted conserved motifs in 15 putative promoters of T. pseudonana genes

From: Phylogenetic analysis of methionine synthesis genes from Thalassiosira pseudonana

Gene Protein ID Length Start p value Sites
Aspartate kinase 269371 500 232 1.31e−05 GATGCTCACG TCTCGCCATG
Aspartate semialdehyde dehydrogenase 32577 500 114 5.43e−05 GGCCATTGTG GGTAAAAAAG
Cystathionine β-lyase-like 269520 1,000 780 1.32e−07 GGAGAAGAGG AAGGTCGTGT
Cystathionine γ-synthase-like 9830 500 45 3.82e−05 GAGGGCGGAG GCCCTCTCTC
Homoserine acetyltransferase 12141 700 64 8.59e−06 AAGAGGCTTC CGACGACAGA
Homoserine dehydrogenase 29144 300 60 4.12e−05 ACAACTGAAC CTTGGTGTGC
Homoserine dehydrogenase 40655 500 332 1.72e−06 TCCTTTGCGT CTTGATGTAT
Homoserine dehydrogenase 24587 300 154 3.92e−06 GTTAGTTGTT TTGGTTTGCT
Homoserine kinase 28592 1,000 81 2.85e−07 CCATATCTTT TTTCGATCGA
Methionine synthase 693 1,000 36 4.39e−07 CGTCGACAGA CTGAAACAGA
Methionine γ-lyase-like 11993 700 323 6.40e−06 GCGTTGACAT GCCTCATGTC
SAM synthetase 21815 500 336 9.81e−06 AACGTGCCTC CTGGTATGGT
SAM synthetase 39946 300 152 1.04e−05 ACCATTGTTT GGGTAACAGC
Glutamylcysteine synthetase 13064 1,000 4 3.29e−05 GTG TGCTTTTCGG
Glutathione synthetase 29212 1,000 700 3.41e−05 GCTTCATGAG GTGTTTGGAG
  1. The columns “Protein ID” and “Length” contain entry numbers of protein models and length of is DNA sequence up-stream of 5′-UTR. The following columns present start position, random letters probability and the sequence of the conserved motif with ten nucleotide padding.