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Table 1 Predicted target peptides of selected proteins of Thalassiosira pseudonana

From: Phylogenetic analysis of methionine synthesis genes from Thalassiosira pseudonana

Protein Protein ID Length Loc RC Mito Secr Other TP length Cleavage site CD start
Aspartate kinase 29008 936 S 5 0.437 0.54 0.034 19 VTS-FAP 90
Aspartate kinase 269371 619 S 1 0.033 0.887 0.078 26 IGA-FSP 144
Aspartate semialdehyde dehydrogenase 32577 345 _ 2 0.074 0.121 0.859   6
Homoserine dehydrogenase 40655 435 _ 1 0.048 0.096 0.926   5
Homoserine dehydrogenase 24587 502 _ 4 0.271 0.15 0.552   128
Homoserine dehydrogenase 29144 433 _ 3 0.249 0.045 0.775   1
Homoserine acetyltransferase 12141 375 _ 1 0.081 0.062 0.938   65
Homoserine kinase 28592 358 M 5 0.439 0.082 0.412 36 VPA-SSA 28
Cystathionine β-lyase-like 269520 456 M 5 0.49 0.065 0.459 66 SAH-DGS 1
Cystathionine γ-synthase-like 9830 381 _ 1 0.037 0.114 0.95   61
Methionine γ-lyase-like 11993 487 M 3 0.765 0.025 0.257 39 ENK-HAT 45
Methionine synthase 693 1,359 _ 2 0.123 0.066 0.878   85
SAM synthetase 21815 465 _ 2 0.098 0.076 0.886   4
SAM synthetase 39946 450 _ 3 0.247 0.059 0.741   65
Glutamylcysteine synthetase 13064 636 M 5 0.57 0.053 0.445 36 NRV-KDL 231
Glutathione synthetase 29212 533 _ 3 0.044 0.298 0.826   6
  1. The first two columns “ProteinID” and “Length” contain entry numbers of protein models and its amino acids length. In the “Loc” column is the predicted localization: S secreted, M mitochondrial, _ any other localization. RC stands for Reliability Class of the prediction (scale: 1 to 5, where 1 is the best). Columns titled “mito”, “secr”, “other” contain final NN scores on which the prediction is based for mitochondrial, secretion and other localization; respectively. The “TP length” and “cleavage site” columns present predicted presequence lengths and the respective cleavage site motif. The “CD Start” column contains lengths of N-terminal sequences preceding Conserved Catalytical Domains of respective proteins.