Identification of QTLs and possible candidate genes conferring sheath blight resistance in rice (Oryza sativa L.)

Yadav, Shailesh; Anuradha, Ghanta; Kumar, Ravi Ranjan; Vemireddy, Lakshminaryana Reddy; Sudhakar, Ravuru; Donempudi, Krishnaveni; Venkata, Durgarani; Jabeen, Farzana; Narasimhan, Yamini Kalinati; Marathi, Balram; Siddiq, Ebrahimali Abubacker

doi:10.1186/s40064-015-0954-2

SpringerPlus

Table 4 List of candidate genes identified in the QTL mapped region qShb 9.2

From: Identification of QTLs and possible candidate genes conferring sheath blight resistance in rice (Oryza sativa L.)

Chr. ID	Locus ID	Position start – end (bp)	Description (RAP-DB annotation)
Chr# 9	Os09g0520550	21076561- 21079025	Hypothetical protein.
	Os09g0522000	21137921- 21138817	Similar to CBF-like protein
	Os09g0525300	21354401- 21357048	Cyclin-like F-box domain containing protein
	Os09g0527900	21478060- 21481626	Similar to Hd1-like protein
	Os09g0528700	21523011- 21524758	Cytochrome P450 family protein
	Os09g0530800	21626098- 21629408	Proteinase inhibitor, propeptide domain containing protein
	Os09g0533200	21770245-21771297	Similar to β-1, 3-glucanase precursor (EC 3.2.1.39).
	Os09g0534600	21844366- 21849310	Similar to Heat shock protein 82
	Os09g0534800	21860615- 21863638	Transcription initiation factor IIB (TFIIB).
	Os09g0535200	21877935-21881669	Conserved Hypothetical protein.
	Os09g0535400	21886226-21887515	Curculin-like (mannose-binding) lectin domain containing protein.
	Os09g0536000	21895656-21900367	Exodeoxyribonuclease III xth family protein.
	Os09g0537700	21987605-21989587	Ribonuclease T2 family protein
	Os09g0538450	22028070-22028968	Hypothetical protein.
	Os09g0540800	22123789-22125783	Eukaryotic transcription factor, DNA-binding domain containing protein
	Os09g0541000	22141777-22143042	Similar to Plasma membrane intrinsic protein (Aquaporin).
	Os09g0541900	22170483-22173850	Similar to 26S proteasome subunit RPN3a.
	Os09g0543900	22282226-22284281	Transferase family protein.
	Os09g0544400	22328257-22346493	Similar to Glutathione S-transferase GST 16 (EC 2.5.1.18).
	Os09g0544900	22369643-22374563	Glucose/ribitol dehydrogenase family protein.
	Os09g0547800	22484690-22486975	Cyclin-like F-box domain containing protein.
	Os09g0549700	22577011-22578446	Ribosomal protein L18P/L5E family protein.
	Os09g0551000	22629301-22632936	Protein kinase domain containing protein.
	Os09g0553100	22743724-22744310	Histone H4.
	Os09g0553600	22762665-22766553	Similar to NADC homolog.
	Os09g0560200	23092024-23093755	Similar to 26S protease regulatory subunit 6B
	Os09g0562400	23166029-23177080	Similar to mutator-like transposase [Oryza sativa (japonica cultivar- group)].
	Os09g0563300	23214566-23218631	Similar to RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit)
	Os09g0565400	23345149-23348841	Lipoprotein, type 6 family protein
	Os09g0569200	23544922-23548178	Similar to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase).
	Os09g0569300	23548388-23551570	Similar to Calmodulin-binding heat-shock protein
	Os09g0569400	23551978-23559137	Beta-lactamase-like domain containing protein

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