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Figure 1

From: ITS1, 5.8S and ITS2 secondary structure modelling for intra-specific differentiation among species of the Colletotrichum gloeosporioides sensu lato species complex

Figure 1

Column alignment and STAR (structure-based alignment reliabilities) profile plots for ITS1 and ITS2 sequences as generated by LocaRNA-P. (i): LocaRNA-P-inferred (i): Column alignment -Dot-Bracket Notation (DBN) - Dotted positions represent unpaired bases and matching parenthesized positions represent paired bases, and (ii): a STAR (structure-based alignment reliabilities) profile plots for ITS1 and ITS2 sequences. In the probability plots, the dark regions indicate structure reliability, the light regions represent sequence reliability, and the thin line shows the combined column-reliability. The STAR profile plot combined with automated detection of high-reliability regions yields accurate boundaries of structural RNA.

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