Sequence exploration reveals information bias among molecular markers used in phylogenetic reconstruction for Colletotrichum species

Rampersad, Sephra N; Hosein, Fazeeda N; Carrington, Christine VF

doi:10.1186/2193-1801-3-614

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Table 1 Authentic sequences for accepted Colletotrichum species (Cannon et al. 2008 )

From: Sequence exploration reveals information bias among molecular markers used in phylogenetic reconstruction for Colletotrichum species

Marker	GenBank Accession No.	Strain¹	Source	Species
GAPDH	FJ972582	CBS 95397	Culture from epitype	Colletotrichum gloeosporioides sensu stricto
GAPDH	FJ972577	MFU090228, ICMP 18581, CBS 130416	Culture from holotype	Colletotrichum fructicola
GAPDH	FJ972576	MFU 090233, ICMP 18580, CBS 130418	Culture from holotype	Colletotrichum asianum
GAPDH	FJ972575	MFU 090230, ICMP 18578, CBS 130417	Culture from holotype	Colletotrichum siamense
GAPDH	FJ972572	MFU 090230, ICMP 18578, CBS 130417	Culture from holotype	Colletotrichum siamense
GAPDH	FJ972571	MFU 090233, ICMP 18580, CBS 130418	Culture from holotype	Colletotrichum asianum
GAPDH	JX010078	ICMP 17673, ATCC 201874	Culture from holotype	Colletotrichum tropicale
GAPDH	GU888192	CBS:151.28	Culture from holotype	Colletotrichum lindemuthianum
ACT	FJ907430	CBS 95397	Culture from epitype	Colletotrichum gloeosporioides sensu stricto
ACT	FJ907426	MFU090228, ICMP 18581, CBS 130416	Culture from holotype	Colletotrichum fructicola
ACT	FJ907423	MFU 090230, ICMP 18578, CBS 130417	Culture from holotype	Colletotrichum siamense
ACT	FJ907420	MFU 090230, ICMP 18578, CBS 130417	Culture from holotype	Colletotrichum siamense
ACT	FJ903188	MFU 090233, ICMP 18580, CBS 130418	Culture from holotype	Colletotrichum asianum
ACT	JX009489	CBS 124949, ICMP18653	Culture from holotype	Colletotrichum tropicale
ACT	GU227898	CBS:151.28	Culture from holotype	Colletotrichum lindemuthianum
TUB	FJ907445	CBS 95397	Culture from epitype	Colletotrichum gloeosporioides sensu stricto
TUB	FJ907439	MFU 090233, ICMP 18580, CBS 130418	Culture from holotype	Colletotrichum asianum
TUB	FJ907435	MFU 090230, ICMP 18578, CBS 130417	Culture from holotype	Colletotrichum siamense
TUB	FJ907434	MFU 090233, ICMP 18580, CBS 130418	Culture from holotype	Colletotrichum asianum
TUB	JX010407	CBS 124949, ICMP18653	Culture from holotype	Colletotrichum tropicale
TUB	GU228094	CBS:151.28	Culture from holotype	Colletotrichum lindemuthianum
ITS	FJ972612	MFU 090233, ICMP 18580, CBS 130418	Culture from holotype	Colletotrichum asianum
ITS	FJ972611	MFU090228, ICMP 18581, CBS 130416	Culture from holotype	Colletotrichum fructicola
ITS	FJ972609	CBS 95397	Culture from epitype	Colletotrichum gloeosporioides sensu stricto
ITS	FJ972605	MFU 090233, ICMP 18580, CBS 130418	Culture from holotype	Colletotrichum asianum
ITS	FJ972604	MFU 090230, ICMP 18578, CBS 130417	Culture from holotype	Colletotrichum siamense
ITS	FJ972603	MFU090228, ICMP 18581, CBS 130416	Culture from holotype	Colletotrichum fructicola
ITS	JX010264	CBS 124949, ICMP18653	Culture from holotype	Colletotrichum tropicale
ITS	AY376534	STE-U 5297	Culture from ex-epitype	Colletotrichum gloeosporioides sensu stricto
ITS	EU371022	IMI 356878	Culture from epitype	Colletotrichum gloeosporioides sensu stricto
ITS	GU227800	CBS:151	Culture from holotype	Colletotrichum lindemuthianum

¹Strain:
ATCC: American type culture collection, 10801 University Boulevard, Manassas, Virginia, USA.
CBS: Culture collection of the Centraalbureau voor Schimmelcultures, Fungal Biodiversity Centre, Utrecht, The Netherlands.
ICMP: International Collection of Microorganisms from Plants, Landcare Research, Auckland, New Zealand.
IMI: Culture collection of CABI Europe UK Centre, Egham, UK.
MFU: fungarium of Mae Fah Luang University, Thailand (cultures in BCC (BIOTEC Culture Collection, Thailand).
STE-U: Culture collection of the Department of Plant Pathology, University of Stellenbosch, South Africa.

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