Figure 4

Examples of output from AWTY. The plots show the partial graphical exploration of the output from the four different runs of the dataset analyzed in MrBayes v.3.2. A. The first graph is the trace plot of the log likelihood (ln L) and the sampled values. Blue and red traces indicate run1 and run2, while burn in is not shown on the plots. B. AWTY bivariate plot of the split frequencies for comparison between paired Bayesian MCMC simulations from MrBayes analyses. The high correlation shows convergence of the runs.