Table 1 Association between FL-cDNA SSRs and transposable elements (TEs) in P. pubescens
TE family | No. | Length (bp) | No. of TE-SSR | No. of SSR-TE | TE-SSR/SSR-TE (%) (in length ) | No. of SSRs with repeat units of: | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1 nt | 2 nt | 3 nt | 4 nt | 5 nt | 6 nt | ||||||
Total TEs | 95 | 13522 | 36 | 29 | 6.08 | 1 | 31 | 4 | 0 | 1 | 0 |
  En/Spm | 8 | 815 | 6 | 5 | 33.87 | 0 | 5 | 1 | 0 | 1 | 0 |
Mutator | 28 | 2931 | 13 | 12 | 14.19 | 1 | 10 | 2 | 0 | 0 | 0 |
  Ty1-copia | 20 | 4010 | 1 | 1 | 0.3 | 0 | 0 | 1 | 0 | 0 | 0 |
  Ty3-gyspy | 17 | 2913 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
  Other TEs | 22 | 2853 | 16 | 11 | 8.70 | 0 | 16 | 0 | 0 | 0 | 0 |
EST | 7089 | 4942281 | 1614 | N.A. | 2.60 | 271 | 489 | 789 | 30 | 14 | 21 |