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Table 3 Parameter estimates from a negative binomial generalized linear mixed model for culture results from a study on the reliability of an environmental sampling protocol and the Intraclass Correlation Coefficient (ICC) for similarity in samples collected by two veterinarians on the same day and from the same pen

From: Reliability of environmental sampling culture results using the negative binomial intraclass correlation coefficient

  

95% Confidence interval

Parameter

Estimate

Lower

Upper

β

1.9516

1.3745

2.6011

r

1.379

1.0138

2.0225

σa

0.2691

2.07E-09

0.8657

σb

1.352

0.5786

2.028

σc

2.11E-09

2.06E-09

0.0303

σd

4.72E-04

2.06E-09

0.0359

ICC

0.5207

0.4033

0.6091

  1. arandom effect for dairy i, i = 1, 2, 3, 4.
  2. brandom effect for pen j, where for i = 1, j = 1,…,8, for i = 2, j = 1,…,11, for i = 3, j = 1,…,7 and for i = 4, j = 1,…,4.
  3. crandom effect for day k of sample collection, where k = 1,2,3.
  4. drandom effect for collector l, where l = 1, 2 and day k; k = 1, 2, 3.