Table 3 Gene expression in basal breast tumors versus not-basal
Part | Gene symbol | Probe ID | Fold change | P-value* |
|---|---|---|---|---|
Core complex | FANCA | 215530_at | 1.51 | 6.41E-03 |
FANCA | 236976_at | 2.07 | 7.57E-04 | |
FANCA | 203806_s_at | 3.06 | 2.74E-12 | |
FANCA | 203805_s_at | 3.40 | 1.93E-13 | |
FANCB | 243597_at | 1.95 | 5.10E-05 | |
FANCB | 1553244_at | 2.38 | 1.26E-05 | |
FANCB | 1557217_a_at | 3.06 | 3.02E-07 | |
FANCB | 1557218_s_at | 4.73 | 5.18E-12 | |
FANCC | 205189_s_at | 1.38 | 3.38E-04 | |
FANCE | 220255_at | 1.62 | 2.80E-08 | |
FANCF | 218689_at | -1.29 | 2.60E-03 | |
FANCG | 203564_at | 1.39 | 1.52E-06 | |
FANCL | 218397_at | 1.52 | 3.79E-06 | |
FANCM | 242711_x_at | -1.28 | 1.26E-02 | |
Central players | FANCD2 | 242560_at | 1.66 | 4.57E-06 |
FANCD2 | 223545_at | 1.74 | 2.22E-05 | |
FANCI | 223785_at | 1.60 | 1.17E-05 | |
FANCI | 213007_at | 1.80 | 1.53E-06 | |
FANCI | 213008_at | 1.98 | 1.46E-06 | |
Downstrem branch | BRCA2 | 208368_s_at | 1.96 | 3.45E-09 |
BRCA2 | 214727_at | 1.76 | 6.74E-08 | |
BRIP1 | 221703_at | 2.04 | 1.28E-03 | |
BRIP1 | 221703_at | 2.04 | 1.28E-03 | |
BRIP1 | 221703_at | 2.04 | 1.28E-03 | |
BRIP1 | 235609_at | 1.96 | 5.75E-05 | |
Acitvating E2Fs | E2F1 | 2028_s_at | 1.63 | 1.89E-05 |
E2F1 | 204947_at | 2.01 | 8.72E-06 | |
E2F2 | 235582_at | 1.55 | 2.28E-02 | |
E2F2 | 228361_at | 1.98 | 2.97E-07 | |
E2F3 | 203692_s_at | 1.95 | 8.13E-17 | |
| Â | E2F3 | 203693_s_at | 2.21 | 1.12E-12 |