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Table 1 Expression of phototransduction pathways genes, Wnt genes, and Circadian rhythm genes

From: Expression of phosphodiesterase 6 (PDE6) in human breast cancer cells

  

Breast cancer cell lines (Average signal)

Patients’ breast cancer tissues (1-8) (Average signal)

  

MCF-7

T47D

MB-435

MB-231

1

2

3

4

5

6

7

8

Phototransduction genes

            

RHO

Rhodopsin

-45

27

31

87

-43

40

-63

14

-45

-90

13

-1

GRK1

Rhodopsin kinase

4.25

102

70

133.9

        

GNAT1 variant 1

Rod transducin alpha subunit

0

77

69

133

8

85

-12

54

31

4*

36

46

GNAT1 variant 2

Rod transducin alpha subunit

73

131*

90

124

54*

108

47**

63

60**

-7

75*

59

GNAT2

Cone transducin alpha subunit

27

93

83

248**

23

172**

-13

26

84**

-29

47

40

GNAZ

Cone transducin alpha subunit

199**

84

204**

118

139*

132**

131**

80**

255**

8*

250**

301

GNB1

Transducin beta subunit

22340**

14936**

14239**

17968**

20122**

20994**

17661**

15477**

21669**

19486**

20140**

17137**

GNB1L

Transducin beta subunit

925**

265**

1160**

1352**

607**

900**

1030**

261**

295**

749**

270**

343**

GNB2

Transducin beta subunit

2968**

675**

1208**

741**

1456**

691**

1171**

773**

3845**

1147**

1066**

1038**

GNG2L

Transducin beta subunit

69029**

73280**

43084**

56176**

62765**

50370**

70951**

65617**

74326**

62703**

59073**

25580**

GNB3

Transducin beta subunit

87*

95

136**

118

111*

117*

50**

179**

126**

23**

76**

96

GNB4

Transducin beta subunit

29

2157**

831**

1250**

229**

204**

687**

186**

288**

702**

565**

591

GNB5 variant 1

Transducin beta subunit

37

58

374**

217**

62**

85

58**

61

64**

17**

69

58

GNB5 variant 2

Transducin beta subunit

-7

54

31

106

19

73

-29

26

13

-61

7

41

GNGT1

Transducin gamma subunit

60

102

63

113

17

89

-24

63

25

-33

40

31

GNGT2

Transducin gamma subunit

-60

64

31

68

7

115

183**

74

15

93**

41

38

SAG

Arrestin

1

85

67

107

33

99

-44

107**

-1

14**

56

51

RLV1

Recoverin

-25

49

59

77

-21

63

7

60

32

-26

19

23

CNGA1

CNG channel alpha subunit

9

64

45

253

16

53

137**

10

139**

-50

30

15

CNGA2

CNG channel alpha subunit

3

76

65

97

4

71

-42

41

31

-41

49

33

CNGA3

CNG channel alpha subunit

-42

5

41

80

-29

66

-64

70

-30

-83

131**

145**

CNGB1

CNG channel beta subunit

13

23

27

81

6

74

-34

19

-7

-35

15

17

CNGB3

CNG channel beta subunit

14

43

44

95

10

93

-51

53

-18

-57

37

13

Wnt genes

             

WNT5A

Wnt

-31

10

293**

113

915**

670**

84**

490**

775**

266**

195**

267**

FZD2

Frizzled-2

864**

1740**

1828**

4896**

1213**

220**

1045**

1576**

1088**

620**

1176**

1186**

Circadian rhythm genes

             

PER1

Period 1

-25

69

53

80

32

100

-23

64

25

-1

62

102**

PER2 variant1

Period 2

7

56

59

93

-6

72

-31

32

21

-48

41

8

PER2 variant2

Period 2

5176**

2856**

1169**

846**

3847**

2745**

2693**

3234**

4415**

3693**

4735**

4683**

PER3

Period 3

4

64

49

89

6

73

-36

33

43

-12

77*

47

CLOCK

Clock

208**

330**

175**

216**

1001*

202*

364**

352**

575**

353**

468**

411*

TIMELESS

Timeless

5334**

8868**

3219**

4254**

2094**

1527**

1478**

2427**

1167**

2119**

1836**

1603**

CRY1

Cryptochrome 1

1302**

688*

682**

2693**

402**

1071**

474**

707**

326**

1205**

1052**

1166**

CRY2

Cryptochrome 2

2862**

1014**

494**

334**

1058**

908**

1622**

1611**

2053**

1604**

1171**

1078**

  1. **P<0.01, *P<0.05, Significant values according to statistical variation for each gene probe analyzed on the Illumina array.