| | | |
Sequence-based models
| | | | | |
Template-based model
| | |
---|
| |
MSA
| | | |
MSA+SS
| | | |
MSA+HOM
| | |
|
Spec
|
Sens
|
MCC
|
FPR
|
Spec
|
Sens
|
MCC
|
FPR
|
Spec
|
Sens
|
MCC
|
FPR
|
| | | | | |
Fungi
| | | | | | |
cyto
|
0.38
|
0.20
|
0.22
|
0.04
|
0.34
|
0.24
|
0.23
|
0.05
|
0.39
|
0.46
|
0.35
|
0.08
|
extr
|
0.50
|
0.57
|
0.52
|
0.01
|
0.49
|
0.49
|
0.48
|
0.01
|
0.51
|
0.73
|
0.59
|
0.01
|
mito
|
0.73
|
0.61
|
0.60
|
0.05
|
0.72
|
0.60
|
0.59
|
0.05
|
0.72
|
0.68
|
0.63
|
0.06
|
nucl
|
0.75
|
0.88
|
0.57
|
0.32
|
0.75
|
0.84
|
0.54
|
0.31
|
0.83
|
0.82
|
0.62
|
0.19
|
orga
|
0.76
|
0.70
|
0.67
|
0.05
|
0.73
|
0.69
|
0.65
|
0.06
|
0.77
|
0.71
|
0.68
|
0.05
|
GC
|
0.56
|
(0.018)
| | |
0.52
| | | |
0.62
|
(0.011)
| | |
Q
|
0.73
|
(0.004)
| | |
0.71
| | | |
0.74
|
(0.005)
| | |
| | | | | |
Animals
| | | | | | |
cyto
|
0.44
|
0.42
|
0.35
|
0.08
|
0.40
|
0.43
|
0.33
|
0.09
|
0.55
|
0.67
|
0.55
|
0.07
|
extr
|
0.73
|
0.78
|
0.72
|
0.04
|
0.70
|
0.78
|
0.70
|
0.04
|
0.76
|
0.87
|
0.78
|
0.04
|
mito
|
0.72
|
0.71
|
0.66
|
0.05
|
0.70
|
0.70
|
0.65
|
0.05
|
0.79
|
0.81
|
0.76
|
0.04
|
nucl
|
0.78
|
0.79
|
0.60
|
0.19
|
0.79
|
0.76
|
0.59
|
0.17
|
0.91
|
0.81
|
0.76
|
0.06
|
orga
|
0.62
|
0.58
|
0.54
|
0.06
|
0.58
|
0.57
|
0.50
|
0.07
|
0.73
|
0.73
|
0.68
|
0.04
|
GC
|
0.60
|
(0.005)
| | |
0.59
| | | |
0.74
|
(0.004)
| | |
Q
|
0.70
|
(0.004)
| | |
0.68
| | | |
0.79
|
(0.003)
| | |
| | | | | |
Plants
| | | | | | |
chlo
|
0.68
|
0.63
|
0.55
|
0.10
|
0.66
|
0.62
|
0.53
|
0.10
|
0.69
|
0.62
|
0.55
|
0.09
|
cyto
|
0.53
|
0.54
|
0.40
|
0.13
|
0.47
|
0.49
|
0.33
|
0.16
|
0.54
|
0.54
|
0.41
|
0.13
|
extr
|
0.41
|
0.45
|
0.41
|
0.02
|
0.42
|
0.34
|
0.36
|
0.01
|
0.41
|
0.49
|
0.43
|
0.02
|
mito
|
0.40
|
0.37
|
0.32
|
0.06
|
0.39
|
0.31
|
0.28
|
0.05
|
0.39
|
0.39
|
0.32
|
0.07
|
nucl
|
0.60
|
0.67
|
0.51
|
0.14
|
0.59
|
0.64
|
0.49
|
0.13
|
0.67
|
0.69
|
0.58
|
0.11
|
orga
|
0.65
|
0.59
|
0.54
|
0.07
|
0.59
|
0.62
|
0.51
|
0.09
|
0.61
|
0.62
|
0.53
|
0.09
|
GC
|
0.49
|
(0.008)
| | |
0.45
| | | |
0.50
|
(0.011)
| | |
Q
|
0.58
|
(0.005)
| | |
0.56
| | | |
0.60
|
(0.004)
| | |
- Results on Fungi, Animal and Plant by all three architectures (MSA, MSA+SS and MSA+HOM) measured in 10-fold cross-validation on the reduced_dataset (see text for details). Best results are in bold. Standard deviations for MSA and MSA+HOM global results are in brackets.