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Table 1 10-fold cross validation results

From: SCLpredT: Ab initio and homology-based prediction of subcellular localization by N-to-1 neural networks

     Sequence-based models       Template-based model   
   MSA     MSA+SS     MSA+HOM   
  Spec Sens MCC FPR Spec Sens MCC FPR Spec Sens MCC FPR
       Fungi       
cyto 0.38 0.20 0.22 0.04 0.34 0.24 0.23 0.05 0.39 0.46 0.35 0.08
extr 0.50 0.57 0.52 0.01 0.49 0.49 0.48 0.01 0.51 0.73 0.59 0.01
mito 0.73 0.61 0.60 0.05 0.72 0.60 0.59 0.05 0.72 0.68 0.63 0.06
nucl 0.75 0.88 0.57 0.32 0.75 0.84 0.54 0.31 0.83 0.82 0.62 0.19
orga 0.76 0.70 0.67 0.05 0.73 0.69 0.65 0.06 0.77 0.71 0.68 0.05
GC 0.56 (0.018)    0.52     0.62 (0.011)   
Q 0.73 (0.004)    0.71     0.74 (0.005)   
       Animals       
cyto 0.44 0.42 0.35 0.08 0.40 0.43 0.33 0.09 0.55 0.67 0.55 0.07
extr 0.73 0.78 0.72 0.04 0.70 0.78 0.70 0.04 0.76 0.87 0.78 0.04
mito 0.72 0.71 0.66 0.05 0.70 0.70 0.65 0.05 0.79 0.81 0.76 0.04
nucl 0.78 0.79 0.60 0.19 0.79 0.76 0.59 0.17 0.91 0.81 0.76 0.06
orga 0.62 0.58 0.54 0.06 0.58 0.57 0.50 0.07 0.73 0.73 0.68 0.04
GC 0.60 (0.005)    0.59     0.74 (0.004)   
Q 0.70 (0.004)    0.68     0.79 (0.003)   
       Plants       
chlo 0.68 0.63 0.55 0.10 0.66 0.62 0.53 0.10 0.69 0.62 0.55 0.09
cyto 0.53 0.54 0.40 0.13 0.47 0.49 0.33 0.16 0.54 0.54 0.41 0.13
extr 0.41 0.45 0.41 0.02 0.42 0.34 0.36 0.01 0.41 0.49 0.43 0.02
mito 0.40 0.37 0.32 0.06 0.39 0.31 0.28 0.05 0.39 0.39 0.32 0.07
nucl 0.60 0.67 0.51 0.14 0.59 0.64 0.49 0.13 0.67 0.69 0.58 0.11
orga 0.65 0.59 0.54 0.07 0.59 0.62 0.51 0.09 0.61 0.62 0.53 0.09
GC 0.49 (0.008)    0.45     0.50 (0.011)   
Q 0.58 (0.005)    0.56     0.60 (0.004)   
  1. Results on Fungi, Animal and Plant by all three architectures (MSA, MSA+SS and MSA+HOM) measured in 10-fold cross-validation on the reduced_dataset (see text for details). Best results are in bold. Standard deviations for MSA and MSA+HOM global results are in brackets.
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