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Table 1 10-fold cross validation results

From: SCLpredT: Ab initio and homology-based prediction of subcellular localization by N-to-1 neural networks

				Sequence-based models						Template-based model
		MSA				MSA+SS				MSA+HOM
	Spec	Sens	MCC	FPR	Spec	Sens	MCC	FPR	Spec	Sens	MCC	FPR
						Fungi
cyto	0.38	0.20	0.22	0.04	0.34	0.24	0.23	0.05	0.39	0.46	0.35	0.08
extr	0.50	0.57	0.52	0.01	0.49	0.49	0.48	0.01	0.51	0.73	0.59	0.01
mito	0.73	0.61	0.60	0.05	0.72	0.60	0.59	0.05	0.72	0.68	0.63	0.06
nucl	0.75	0.88	0.57	0.32	0.75	0.84	0.54	0.31	0.83	0.82	0.62	0.19
orga	0.76	0.70	0.67	0.05	0.73	0.69	0.65	0.06	0.77	0.71	0.68	0.05
GC	0.56	(0.018)			0.52				0.62	(0.011)
Q	0.73	(0.004)			0.71				0.74	(0.005)
						Animals
cyto	0.44	0.42	0.35	0.08	0.40	0.43	0.33	0.09	0.55	0.67	0.55	0.07
extr	0.73	0.78	0.72	0.04	0.70	0.78	0.70	0.04	0.76	0.87	0.78	0.04
mito	0.72	0.71	0.66	0.05	0.70	0.70	0.65	0.05	0.79	0.81	0.76	0.04
nucl	0.78	0.79	0.60	0.19	0.79	0.76	0.59	0.17	0.91	0.81	0.76	0.06
orga	0.62	0.58	0.54	0.06	0.58	0.57	0.50	0.07	0.73	0.73	0.68	0.04
GC	0.60	(0.005)			0.59				0.74	(0.004)
Q	0.70	(0.004)			0.68				0.79	(0.003)
						Plants
chlo	0.68	0.63	0.55	0.10	0.66	0.62	0.53	0.10	0.69	0.62	0.55	0.09
cyto	0.53	0.54	0.40	0.13	0.47	0.49	0.33	0.16	0.54	0.54	0.41	0.13
extr	0.41	0.45	0.41	0.02	0.42	0.34	0.36	0.01	0.41	0.49	0.43	0.02
mito	0.40	0.37	0.32	0.06	0.39	0.31	0.28	0.05	0.39	0.39	0.32	0.07
nucl	0.60	0.67	0.51	0.14	0.59	0.64	0.49	0.13	0.67	0.69	0.58	0.11
orga	0.65	0.59	0.54	0.07	0.59	0.62	0.51	0.09	0.61	0.62	0.53	0.09
GC	0.49	(0.008)			0.45				0.50	(0.011)
Q	0.58	(0.005)			0.56				0.60	(0.004)

Results on Fungi, Animal and Plant by all three architectures (MSA, MSA+SS and MSA+HOM) measured in 10-fold cross-validation on the reduced_dataset (see text for details). Best results are in bold. Standard deviations for MSA and MSA+HOM global results are in brackets.

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