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Table 6 Spearmen’s rank correlation analysis between COA axes and codon usage indices

From: Mutational pressure dictates synonymous codon usage in freshwater unicellular α - cyanobacterial descendant Paulinella chromatophora and β - cyanobacterium Synechococcus elongatus PCC6301

 Axes

 A3

 T3

 G3

 C3

 GC3

 ENC

 CAI

Gravy score

Aromaticity

Length of CDS

Axis 1

−0.434**

−0.094

0.221**

0.559**

0.565**

0.345**

−0.360**

−0.064

−0.081

−0.140**

Axis 2

−0.159**

0.118**

0.092

−0.014

0.041

−0.072

0.104

−0.045

−0.028

0.006

Axis 3

0.008

0.016

0.057

−0.057

−0.015

0.044

0.063

−0.023

−0.024

0.065

Axis 4

0.173**

−0.404**

0.125

0.167**

0.187**

0.343**

−0.258**

0.043

−0.028

−0.074

Axis 5

−0.027

0.060

−0.031

−0.006

−0.035

−0.031

−0.022

−0.075

−0.030

−0.096

  1. Correlation analysis between five different axes of COA and various codon usage indices of 786 PCG in the chromatophore genome of P. chromatophora.
  2. Analysis was made using Spearman’s rank correlation method.
  3. **Significant at p ≤ 0.001 (one tailed).