Table 3 Overall codon usage in P. chromatophora
AA | Codon | N (RSCU) | AA | Codon | N (RSCU) |
|---|---|---|---|---|---|
Phe | TTT | 6873(1.44) | Tyr | TAT | 4818(1.45) |
TTC | 2665(0.56) | TAC | 1810(0.54) | ||
Leu | TTA | 10679(2.06) | TER | TAA | 439(1.67) |
TTG | B4586(0.88) | TAG | 144(0.55) | ||
CTT | 6933(1.33) | His | CAT | 4076(1.54) | |
CTC | 2001(0.39) | CAC | 1209(0.45) | ||
CTA | 5010(0.96) | Gln | CAA | 7465(1.42) | |
CTG | 1961(0.38) | CAG | 2993(0.57) | ||
Ile | ATC | 3060(0.46) | Asn | AAT | 8988(1.56) |
ATT | 9871(1.48) | AAC | 2507(0.43) | ||
ATA | 6960(1.05) | Lys | AAA | 8697(1.42) | |
Met | ATG | 5377(1.00) | AAG | 3498(0.57) | |
Val | GTT | 5473(1.33) | Asp | GAT | 9705(1.60) |
GTC | 2078(0.50) | GAC | 2379(0.39) | ||
GTA | 6876(1.68) | Glu | GAA | 11405(1.46) | |
GTG | 1941(0.47) | GAG | 4189(0.53) | ||
Ser | TCT | 4800(1.55) | Cys | TGT | 2292(1.42) |
TCC | 1460(0.47) | TGC | 922(0.57) | ||
TCA | 3346(1.08) | TER | TGA | 203(0.77) | |
TCG | 912(0.34) | Trp | TGG | 3689(1.00) | |
Pro | CCT | 5240(1.80) | Arg | CGT | 5325(2.08) |
CCC | 1350(0.46) | CGC | 1765(0.69) | ||
CCA | 4110(1.41) | CGA | 2696(1.01) | ||
CCG | 916(0.31) | CGG | 892(0.35) | ||
Thr | ACT | 5928(1.79) | Ser | AGT | 5768(1.87) |
ACC | 1789(0.54) | AGC | 2262(0.73) | ||
ACA | 4202(1.27) | Arg | AGA | 3524(1.38) | |
ACG | 1300(0.39) | AGG | 1169(0.46) | ||
Ala | GCT | 9187(1.85) | Gly | GGT | 7794(1.64) |
GCC | 2787(0.56) | GGC | 2836(0.59) | ||
GCA | 6221(1.25) | GGA | 6200(1.30) | ||
GCG | 1670(0.33) | GGG | 2129(0.44) |