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Table 2 Primers designed from putative xylanase gene sequences of A. niger CBS 513.88

From: Analysis of functional xylanases in xylan degradation by Aspergillus niger E-1 and characterization of the GH family 10 xylanase XynVII

Gene

Size (bp)a

Primer name

Primer sequence

xynI

543

xynIF

5′-atgttcttcaagaccatcctt

xynIR

5′-ttaacccagagtaagagtgaa

xynII

686

xynIIF

5′-atgaaggtcactgcagcttt

xynIIR

5′-taagaagatatcgtgacactg

xynIII

746

xynIIIF

5′-atgctcaccaagaaccttct

xynIIIR

5′-ttactgaacagtgatggacg

xynIV

755

xynIVF

5′-tggtcgcctactcgtctc

xynIVR

5′-tagcagctctcctcggtg

xynV

826

xynVF

5′-atggtgtctttccttggcc

xynVR

5′-ctatgcactaacggtgaagt

xynVI

1043

xynVIF

5′-atgtcgcacccccaacag

xynVIR

5′-ctacgataaagtcctcccc

xynVII

1494

xynVIIF

5′-atggttcagatcaaggtagc

xynVIIR

5′-ctagagagcatttgcgatag

xynVIII

2962

xynVIIIF

5′-tgcgcgtaccgaaccgg

xynVIIIR

5′-tcatatgctccgatgtccc

xynVIII2Fb

5′-aacggaggcatacctcaac

  

xynVIII2Rb

5′-tgttgccacccagcagac

  1. aPutative intron sequences are included in gene sizes.
  2. bxynVIII2F and xynVIII2R were designed from the internal sequence of xynVIII.