Table 3 Taxonomic breakdown of quorum-sensing and quorum-quenching genes in decaying log and tropical soil metagenomes
From: Sociomicrobiome of wood decay in a tropical rain forest: unraveling complexity
Molecule/Receptor | Class | Species | Abundance | e-value | Average identity (%) |
|---|---|---|---|---|---|
Quorum-sensing and quorum-quenching decaying wood | |||||
AHL synthase | Alphaproteobacteria | Phenylobacterium zucineum | 1816 | -22.45 | 70.78 |
LuxR | Alphaproteobacteria | Sinorhizobium fredii | 707 | -22.73 | 70.03 |
AHL acylase | Alphaproteobacteria | Citromicrobium bathyomarinum | 243 | -18.77 | 68.96 |
Gammaproteobacteria | Pseudomonas aeruginosa | 279 | -21.83 | 68.39 | |
AHL lactonase | Actinobacteria | Rhodococcus erythropolis | 169 | -16.22 | 69.00 |
AI-2 nucleosidase | Alphaproteobacteria | Asticcacaulis excentricus | 1172 | -21.00 | 71.41 |
Cytophagia | Dyadobacter fermentans | 736 | -16.32 | 68.38 | |
cdr1 | Eurotiomycetes | Arthroderma gypseum | 111 | -14.55 | 71.01 |
Quorum-sensing and quorum-quenching tropical soil | |||||
AHL synthase | Alphaproteobacteria | Rhodobacter sphaeroides | 600 | -20.00 | 67.60 |
Alphaproteobacteria | Sulfitobacter sp. NAS-14.1 | 201 | -16.97 | 67.99 | |
LuxR | Alphaproteobacteria | Rhodobacter sphaeroides | 600 | -20.00 | 67.60 |
Alphaproteobacteria | Sulfitobacter sp. NAS-14.1 | 201 | -16.97 | 67.99 | |
AHL acylase | Gammaproteobacteria | Pseudomonas fluorescens | 589 | -18.90 | 66.67 |
Gammaproteobacteria | Pseudomonas putida | 288 | -22.18 | 67.29 | |
AHL lactonase | Actinobacteria | Rhodococcus erythropolis | 305 | -19.24 | 66.91 |
Rhodococcus opacus | 512 | -18.72 | 67.73 | ||
AI-2 nucleosidase | Betaproteobacteria | Burkholderia graminis | 683 | -21.89 | 68.39 |
Betaproteobacteria | Burkholderia sp. CCGE1001 | 320 | -20.97 | 67.33 | |
Betaproteobacteria | Variovorax paradoxus | 1184 | -20.16 | 68.73 | |
cdr1 | ND | ND | ND | ND | ND |