Table 2 Comparative taxonomic and functional diversity metrics for selected metagenomes
From: Sociomicrobiome of wood decay in a tropical rain forest: unraveling complexity
Biome | Sample | MG-RAST ID | S1 | d2 | Fisher’s α | H' (loge)3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|
Taxon | Metab4 | Taxon | Metab | Taxon | Metab | Taxon | Metab | |||
Wood | El Yunque log | 4491607.3 | 790 | 22 | 84.52 | 4.50 | 193.30 | 8.44 | 5.84 | 2.79 |
Soil | Agricultural soil | 4441091.3 | 409 | 17 | 46.94 | 3.95 | 99.60 | 8.15 | 5.50 | 2.60 |
Temperate soil | 4453261.3 | 640 | 22 | 66.24 | 4.03 | 134.70 | 6.52 | 5.67 | 2.71 | |
Tropical soil | 4446153.3 | 598 | 22 | 63.89 | 4.30 | 134.20 | 7.52 | 5.65 | 2.73 | |
Compost | 4449125.3 | 461 | 19 | 48.01 | 3.32 | 90.72 | 4.93 | 5.19 | 2.46 | |
Aquatic | Coral reef atoll | 4441604.3 | 559 | 11 | 63.32 | 2.42 | 144.90 | 3.88 | 5.69 | 2.15 |
Antarctic Lake | 4443685.3 | 371 | 4 | 50.34 | 1.08 | 154.10 | 1.61 | 5.61 | 1.36 | |
Microbial Mats | Stromatolite | 4449590.3 | 521 | 10 | 64.59 | 2.87 | 178.30 | 6.75 | 5.78 | 2.20 |
Biofilm | 4460448.3 | 532 | 15 | 57.71 | 3.32 | 120.30 | 5.94 | 5.38 | 2.14 | |
Animal | Cow rumen | 4441681.3 | 338 | 7 | 40.80 | 1.64 | 89.10 | 2.49 | 5.10 | 1.70 |
Combined rumen | 4491686.3 | 386 | 9 | 42.23 | 1.99 | 81.73 | 3.02 | 5.20 | 1.79 | |
Termite gut | 4442701.3 | 425 | 7 | 51.25 | 1.79 | 121.20 | 2.97 | 5.60 | 1.52 | |
Canine gut | 4444703.3 | 418 | 8 | 47.11 | 1.90 | 97.60 | 3.02 | 5.07 | 1.73 | |
VW Pig gut | 4461380.3 | 387 | 4 | 48.45 | 1.09 | 120.30 | 1.75 | 5.33 | 1.30 | |