Table 1 Filtering parameters used for El Yunque log metagenome
From: Sociomicrobiome of wood decay in a tropical rain forest: unraveling complexity
Parameter | Description | |
|---|---|---|
Length filtering | Standard deviation multiplicator for length cutoff | 2.0 |
Ambiguous base filtering | Maximum number of allowed ambiguous base pairs | 5 |
Dynamic trimming | Lowest phred score counted as high quality base | 15 |
Trim number of bases in low quality sequences | 5 | |
Dereplication | Remove artificial replicate sequences | N/A |
Screening | Remove host-specific sequences | H. sapiens NCBI v36 |