Table 3 TCGA tumors positive for partial HER-2 region amplification but with low HER-2 mRNA expression
From: HER-2 gene amplification in human breast cancer without concurrent HER-2 over-expression
Tumor ID | GISICC2 values highest over Amplicon-140Â kb | RNAseqV1 HER-2 values | HER-2 IHC |
|---|---|---|---|
TCGA-D8-A1JG | 0.58 | 1.09 | 2 + |
TCGA-AN-A041 | 0.64 | 0.88 | 2 + |
TCGA-A8-A070 | 0.72 | - 5.50 | 1 + |
TCGA-A8-A0AD | 0.74 | - 0.65 | 1 + |
TCGA-D8-2A7G | 0.78 | - | 2 + |
TCGA-A2-A0YE | 1.12 | - 4.00 | 0 + |
TCGA-C8-A26X | 1.14 | - 2.74 | 1 + |
TCGA-A7-A13D | 1.68 | - 2.57 | 2 + |
TCGA-A8-A06U | 1.81 | - 1.70 | 2 + |
TCGA-BH-A1EN | 6.00 | - 3.90 | - |