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Table 2 Results of 16S rDNA sequencing of DGGE-bands of desert soil samples in Figure  3

From: Bias problems in culture-independent analysis of environmental bacterial communities: a representative study on hydrocarbonoclastic bacteria

Band no. Total bases Phylum Nearest GenBank match Similarity (%) Bases compared Accession number
1 462 Flavobacteriia Salinimicrobium xinjiangense strain BH206 98 486/498 KC147483
2 493 Sphingobacteriia Sediminibacterium sp. nju-T3 99 494/495 KC147484
3 423 Sphingobacteriia Segetibacter koreensis strain Gsoil 664 95 476/502 KC147485
4 500 β-proteobacteria Ralstonia solanacearum strain in4ss52 100 500/500 KC147486
5 512 β-proteobacteria Ralstonia solanacearum strain in4ss52 100 512/512 KC147487
6 493 β-proteobacteria Naxibacter alkalitolerans strain A12 99 503/510 KC147488
7 519 γ-Proteobacteria Acinetobacter junii strain OVC9 100 519/519 KC147489
8 502 Synergistetes Synergistaceae* bacterium enrichment culture clone B6_95 100 502/502 KC147490
9 510 γ-Proteobacteria Acinetobacter junii strain OVC9 100 510/510 KC147491
10 469 γ-Proteobacteria Uncultured Chromatiales† bacterium isolate DGGE gel band B16 98 491/502 KC147492
11 468 γ-Proteobacteria Uncultured Chromatiales bacterium isolate DGGE gel band B16 98 490/501 KC147493
12 501 Synergistetes Synergistaceae bacterium enrichment culture clone B6_95 99 504/505 KC147494
13 462 Cytophagia Pontibacter akesuensis strain AKS 1 96 503/523 KC147495
14 447 Cytophagia Pontibacter xinjiangensis strain: NBRC 107674 95 498/523 KC147496
15 376 Firmicutes Bacillales bacterium Mi4 91 457/503 KC147497
16 421 Firmicutes Firmicutes bacterium enrichment culture clone BSK_60 95 465/487 KC147498
17 463 β-proteobacteria Curvibacter delicatus strain: NBRC 14919 97 500/518 KC147499
18 513 Firmicutes Planomicrobium glaciei strain L25 99 515/516 KC147500
19 494 Firmicutes Planomicrobium alkanoclasticum strain QT3+ 99 498/502 KC147501
20 498 Firmicutes Bacillus niacini strain GYR1 99 502/506 KC147502
21 480 β-proteobacteria Burkholderia oxyphila clone: pCR2.1::OX-01_rDNA#7 97 499/512 KC147503
22 425 Firmicutes Bacillus selenatarsenatis strain NBSL41 96 458/475 KC147504
23 501 Firmicutes Planomicrobium glaciei strain GDM825 99 502/503 KC147505
24 493 Firmicutes Planomicrobium okeanokoites 99 494/495 KC147506
25 475 Firmicutes Planomicrobium okeanokoites strain QL-25 98 486/494 KC147507
26 514 Firmicutes Planomicrobium glaciei strain L25 99 516/517 KC147508
27 427 Firmicutes Uncultured Geobacillus sp. clone SHBZ1548 94 484/513 KC147509
28 464 Firmicutes Bacillus selenatarsenatis strain NBSL41 95 496/521 KC147510
29 505 Firmicutes Bacillus selenatarsenatis strain NBSL41 99 506/507 KC147511
30 475 γ-Proteobacteria Halomonas xinjiangensis strain YIM 91125 97 502/518 KC147512
  1. *Hydrocarbon-utilizers (Scherr et al. 2012).
  2. † Hydrocarbon-utilizers (Jiménez et al. 2007).