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Table 2 Results of 16S rDNA sequencing of DGGE-bands of desert soil samples in Figure  3

From: Bias problems in culture-independent analysis of environmental bacterial communities: a representative study on hydrocarbonoclastic bacteria

Band no.

Total bases

Phylum

Nearest GenBank match

Similarity (%)

Bases compared

Accession number

1

462

Flavobacteriia

Salinimicrobium xinjiangense strain BH206

98

486/498

KC147483

2

493

Sphingobacteriia

Sediminibacterium sp. nju-T3

99

494/495

KC147484

3

423

Sphingobacteriia

Segetibacter koreensis strain Gsoil 664

95

476/502

KC147485

4

500

β-proteobacteria

Ralstonia solanacearum strain in4ss52

100

500/500

KC147486

5

512

β-proteobacteria

Ralstonia solanacearum strain in4ss52

100

512/512

KC147487

6

493

β-proteobacteria

Naxibacter alkalitolerans strain A12

99

503/510

KC147488

7

519

γ-Proteobacteria

Acinetobacter junii strain OVC9

100

519/519

KC147489

8

502

Synergistetes

Synergistaceae* bacterium enrichment culture clone B6_95

100

502/502

KC147490

9

510

γ-Proteobacteria

Acinetobacter junii strain OVC9

100

510/510

KC147491

10

469

γ-Proteobacteria

Uncultured Chromatiales† bacterium isolate DGGE gel band B16

98

491/502

KC147492

11

468

γ-Proteobacteria

Uncultured Chromatiales bacterium isolate DGGE gel band B16

98

490/501

KC147493

12

501

Synergistetes

Synergistaceae bacterium enrichment culture clone B6_95

99

504/505

KC147494

13

462

Cytophagia

Pontibacter akesuensis strain AKS 1

96

503/523

KC147495

14

447

Cytophagia

Pontibacter xinjiangensis strain: NBRC 107674

95

498/523

KC147496

15

376

Firmicutes

Bacillales bacterium Mi4

91

457/503

KC147497

16

421

Firmicutes

Firmicutes bacterium enrichment culture clone BSK_60

95

465/487

KC147498

17

463

β-proteobacteria

Curvibacter delicatus strain: NBRC 14919

97

500/518

KC147499

18

513

Firmicutes

Planomicrobium glaciei strain L25

99

515/516

KC147500

19

494

Firmicutes

Planomicrobium alkanoclasticum strain QT3+

99

498/502

KC147501

20

498

Firmicutes

Bacillus niacini strain GYR1

99

502/506

KC147502

21

480

β-proteobacteria

Burkholderia oxyphila clone: pCR2.1::OX-01_rDNA#7

97

499/512

KC147503

22

425

Firmicutes

Bacillus selenatarsenatis strain NBSL41

96

458/475

KC147504

23

501

Firmicutes

Planomicrobium glaciei strain GDM825

99

502/503

KC147505

24

493

Firmicutes

Planomicrobium okeanokoites

99

494/495

KC147506

25

475

Firmicutes

Planomicrobium okeanokoites strain QL-25

98

486/494

KC147507

26

514

Firmicutes

Planomicrobium glaciei strain L25

99

516/517

KC147508

27

427

Firmicutes

Uncultured Geobacillus sp. clone SHBZ1548

94

484/513

KC147509

28

464

Firmicutes

Bacillus selenatarsenatis strain NBSL41

95

496/521

KC147510

29

505

Firmicutes

Bacillus selenatarsenatis strain NBSL41

99

506/507

KC147511

30

475

γ-Proteobacteria

Halomonas xinjiangensis strain YIM 91125

97

502/518

KC147512

  1. *Hydrocarbon-utilizers (Scherr et al. 2012).
  2. † Hydrocarbon-utilizers (Jiménez et al. 2007).