Skip to main content

Table 2 Details of SSR loci used in the present study and their genetic diversity parameters

From: Genetic structure and diversity of indigenous rice (Oryza sativa) varieties in the Eastern Himalayan region of Northeast India

Primer name

Chr

SSR motif

Forward 5-3

Reverse 5-3

N a

H e

RM302

1

(GT)30(AT)8

TCATGTCATCTACCATCACAC

ATGGAGAAGATGGAATACTTGC

10

0.805

RM341

2

(CTT)20

CAAGAAACCTCAATCCGAGC

CTCCTCCCGATCCCAATC

19

0.861

RM130

3

(GA)10

TGTTGCTTGCCCTCACGCGAAG

GGTCGCGTGCTTGGTTTGGTTC

4

0.419

RM307

4

(AT)14(GT)21

GTACTACCGACCTACCGTTCAC

CTGCTATGCATGAACTGCTC

9

0.749

RM169

5

(GA)12

TGGCTGGCTCCGTGGGTAGCTG

TCCCGTTGCCGTTCATCCCTCC

14

0.798

RM204

6

CT)44

GTGACTGACTTGGTCATAGGG

GCTAGCCATGCTCTCGTACC

18

0.866

RM264

8

(GA)27

GTTGCGTCCTACTGCTACTTC

GATCCGTGTCGATGATTAGC

21

0.884

  1. Chr, Chromosome location; Na, Observed number of alleles; He, Nei (1973) genetic diversity.