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Table 1 Cultivation type, location and genetic diversity values of traditionally cultivated indigenous and agronomically improved rice varieties including the wild rice ( O. rufipogon ) in Northeast India (AP, Arunachal Pradesh; AS, Assam, ML, Meghalaya, MZ, Mizoram)

From: Genetic structure and diversity of indigenous rice (Oryza sativa) varieties in the Eastern Himalayan region of Northeast India

Variety name

Type

Location

A

Na

Npo

Npe

RA

I

H e

Lahi

Sali

Doimukh (AP)

11

1.571

3

42.86

1

0.271

0.187

Local Basmati

Sali

Doimukh (AP)

9

1.286

2

28.57

-

0.148

0.105

Borjahinga

Sali

N. Lakhimpur, (AS)

10

1.429

2

28.57

-

0.187

0.130

Joha

Sali

Doimukh (AP)

8

1.143

1

14.29

-

0.096

0.076

Hati Hali

Sali

N. Lakhimpur, (AS)

13

1.857

5

71.43

1

0.377

0.263

Balam

Sali

Cachar (AS)

12

1.714

3

42.86

-

0.328

0.222

Lallatoi

Sali

Hailakandi (AS)

23

3.286

6

85.71

4

0.854

0.498

Arfa

Sali

Hailakandi (AS)

13

1.857

4

57.14

1

0.438

0.305

Mulahail

Sali

Hailakandi (AS)

20

2.857

5

71.43

1

0.719

0.435

Guaroi

Sali

Hailakandi (AS)

13

1.857

5

71.43

-

0.330

0.219

Harinarayan

Sali

Hailakandi (AS)

11

1.571

3

42.86

-

0.262

0.166

Bherapawa

Sali

Hailakandi (AS)

8

1.143

1

14.29

-

0.072

0.051

Papue

Jum

West Siang (AP)

9

1.286

2

28.57

-

0.143

0.105

Sorpuma

Jum

Doimukh (AP)

10

1.429

3

42.86

-

0.239

0.181

Kawanglawang

Jum

Aizwal, (MZ)

17

2.429

6

85.71

1

0.578

0.365

Mimutim

Jum

Garo Hills (ML)

17

2.429

5

71.43

3

0.595

0.384

Til Bora

Glutinous

N. Lakhimpur, (AS)

12

1.714

5

71.43

-

0.237

0.152

Kakiberoin

Glutinous

Hailakandi (AS)

12

1.714

4

57.14

-

0.306

0.207

Borua Beroin

Glutinous

Cachar (AS)

14

2.000

4

57.14

-

0.357

0.224

Ranga Borah

Glutinous

N. Lakhimpur, (AS)

13

1.857

3

42.86

1

0.239

0.135

Bas Beroin

Glutinous

Cachar (AS)

10

1.429

3

42.86

-

0.288

0.228

Aubalam

Boro

Cachar (AS)

15

2.143

5

71.43

1

0.569

0.394

Bashful

Boro

Cachar (AS)

11

1.571

3

42.86

-

0.315

0.232

Moircha

Boro

Cachar (AS)

11

1.571

3

42.86

-

0.167

0.098

Ranjit

Improved

Hailakandi (AS)

7

1

0

0

-

0

0.000

IR8

Improved

Hailakandi (AS)

7

1

0

0

-

0

0.000

Bahadur

Improved

Hailakandi (AS)

7

1

0

0

-

0

0.000

Pankaj

Improved

Hailakandi (AS)

7

1

0

0

-

0

0.000

Joya

Improved

Hailakandi (AS)

7

1

0

0

-

0

0.000

O. rufipogon

Wild

Eastern India

29

4.833

6

85.71

4

1.137

0.556

  1. A = Observed no. of allele; Na = Average no. of alleles per 7 loci; Npo = No. of polymorphic loci; Npe = Percent polymorphic loci; RA = Rare allele; I = Shannon information index; H e = Nei gene diversity.