Characterization of x-type high-molecular-weight glutenin promoters (x-HGP) from different genomes in Triticeae

Qian-Tao Jiang; Quan-Zhi Zhao; Xiu-Ying Wang; Chang-Shui Wang; Shan Zhao; Xue Cao; Xiu-Jin Lan; Zhen-Xiang Lu; You-Liang Zheng; Yu-Ming Wei

doi:10.1186/2193-1801-2-152

SpringerPlus

Table 2 Sequence variations of element of x-HGP from 21 species in Triticeae and outgroups, y-HGP from four species of Hordeum

From: Characterization of x-type high-molecular-weight glutenin promoters (x-HGP) from different genomes in Triticeae

*Species*	*E motif*	*N motif*	*Partial Enhancer*	*Enhancer*	*TATA box*	*Start*
	*(TGTAAAGT)*	*(TGAGTCAT)*	*(TTTGCAAA)*	*(GTTTTGCAAAGCTCCAATTGCTCCTTGCTT ATCCAGCT)*	*(CTATAAAAG)*	*(TTATCA)*
TRUR	TGTAAATC	TGAGTCAT	TTTGCAAA	GTTTTACAAAGCTCCAATTGCTCCTTGCTTATCCAGCT	CTATAAAAG	TCTTCA
TRBO	TGTAAATC	TGAGTCAT	TTTGCAAA	GTTTTGCAAAGCTCCAATTGCTCCTTGCTTATCCAGCT	CTATAAAAG	TCCTCA
AEBI	TGTAAATC	TGAGTCAT	TTTGCAAA	GTTTTGCAAAGCTCCAATTGCTCCTTTCTTATCTAGCT	CTATAAAAG	TCATCA
AELO	TGTAAATC	TGAGTCAT	TTTGCAAA	GTTTTGCAAAGCTCCAATTGCTCCTTTCTTATCTAGCT	CTATAAAAG	TCATCA
AESE	TGTAAATC	TGAGTCAT	TTTACAAA	GTTTTGCAAAGCTCCAATTGCTCCGTGCTTATCTAGCT	CTATAAAAG	TCGTCA
AESH	TGTAAATC	TGAGTCAT	TTTGCAAA	GTTTTGCAAAGCTCCAATTGCTCCTTTCTTATCTAGCT	CTATAAAAG	TCATCA
AESP	TGTAAATC	TGAGTCAT	TTTGCAAA	GTTTTGCAA-GCTCCAATTGCTCCTTGCTTATCTAGCT	CTATAAAAG	TCGTCA
AETA	TGTAAATC	TGAGTCAT	TTTGCAAA	GTTTTGCAAAGCTCCAATTGCTCCTTGCTTATCCAGCT	CTATAAAAG	TTATCA
THBE	TGTAAATC	TGAGTCAT	TTTGCAAA	-TTTTGCAAAGCTCCAATTGCTCCTTACTTATCCAGCT	CTATAAAAA	TCATCA
THEL	TGTAAATC	TGAGTCAT	TTTGCAAA	GTTTTGCAAAGCTCCAATTGCTCCTTACTTATCCAGCT	CTATAAAAA	TCATCA
ERBO	TGTAAATC	TGAGTCAT	TTTGCAAA	GTTTTGCAAAGCTCCAATTGCTCCTTACTTATCCAGCT	CTATAAAAG	TCATCA
AECO	TGTAAATC	TGAGTCAT	TTTGCAAA	GTTTCGCAAAGCTCCAATTGCTCCTTTCTTATCTAGCT	CTATAAAAG	TCATCA
PSHU	TGTAAGTT	TGAGTCAT	TTTGCAAG	GTTTCGCAAAGCTCCAATTGCCCCTTGCTTATCTAGCT	CTATAAAAG	TCATCA
HEPE	TGTAAATC	TGAGTCAT	TTTGCAAA	GTTTTGCAAAGCTCCAATTGCTCCTTGCTTATTCAGCT	CTATAAAAG	TCATCA
AGCR	TGTAAATC	TGAGTCAT	TTTGCAAA	GTTTTGCAAAGCTCCAATTGCTCCTTGCTTATCCAGCT	CTATAAAAG	TCATCA
SESY	TGTAAGTC	TGAGTCAT	TTTGCAAA	GTTTTGCAAAGCTCCAATTGCTCCTTACTTATCCAGTT	CTATAAAAG	TCATCA
SEST	TGTAAGTC	TGAGTCAT	TTTGCAAA	GTTTTGCAAAGCTCCAATTGCTCCTTACTTATCCAGTT	CTATAAAAG	TCATCA
SECE	TGTAAGTC	TGAGTCAT	TTTGCAAA	GTTTTGCAAAGCTCCAATTGCTCCTTACTTATCCAGCT	CTATAAAAG	TCATCA
AEUN	TGTAAATC	TGAGTCAT	TTTGCAAA	GTTTTGCAAAGCTCCAATTGTTCCTTGCTTATCCAGCT	CTATAAAAG	TCATCA
TACA	TGTAAATC	TGAGTCAT	TTTGCAAA	GTCTTGCAAAGCTCCAATTGCTCCTTGCTTATCCAGCT	CTATAAAAG	TCATCA
AEUM	TGTAAACC	TGAGTCAT	TTTGCAAA	GTTTTGCAAAGCTCCAATTGCTCCTTGCTTATCCAGCT	CTATAAAAG	TTATCA
HOBO	TGTAAATG	TGAGTCAT	deleted	GTTTTGCAAAGCTCCAATTGCACCTTGCTTATCCAGCT	CTATAAAAG	TCATCA
HOBR	TGTAAATG	TGAGTCAT	deleted	GTTTTGCAAAGCTCCAATTGCACCTTGCTTATCCAGCT	CTATAAAAG	TCATCA
HOBU	TGTAAATC	TGAGTCAT	deleted	ATTTTGCAAAGCTCCAATTGCACCTCGCTTATCCAACT	CTATAAAAG	TCATCA
HOSP	TGTAAATC	TGAGTCAT	deleted	GTTTTGCAAAGCTCCAATTGCACCTCGCTTATCCAACT	CTATAAAAG	TCATCA

The positions of variation were underlined in the corresponding loci of consensus sequences.

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