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Table 2 Summary of 29 SNPs used in this study

From: An approach to predict the risk of glaucoma development by integrating different attribute data

dbSNP ID

Chr.

SNP type

Nearest gene

Genotype frequency

rs547984

1

intergenic

ZP4

AA(0.263) AC(0.488) CC(0.249)

rs1892116

1

intronic

AHCTF1

AA(0.507) AG(0.445) GG(0.048)

rs4666488

2

intergenic

OSR1

AA(0.100) AG(0.397) GG(0.503)

rs2268794

2

intronic

SRD5A2

AA(0.005) AT(0.319) TT(0.676)

rs7574012

2

intergenic

QPCT

AA(0.373) AG(0.459) GG(0.168)

rs1990702

2

intergenic

LRP2

GG(0.120) GA(0.433) AA(0.447)

rs10930437

2

intergenic

SP5

AA(0.429) AG(0.454) GG(0.117)

rs779701

3

intronic

GRM7

AA(0.490) AG(0.413) GG(0.097)

rs6550783

3

intergenic

UBE2E1

AA(0.412) AG(0.442) GG(0.146)

rs6550308

3

intergenic

ARPP21

GG(0.215) GA(0.488) AA(0.297)

rs3922704

3

intronic

PLCXD2

CC(0.034) CG(0.254) GG(0.712)

rs17279573

4

intergenic

KIAA0922

GG(0.120) GA(0.483) AA(0.397)

rs818725

5

intronic

ADAMTS12

CC(0.019) CG(0.226) GG(0.755)

rs11750584

5

intergenic

HEATR7B2

CC(0.029) CG(0.292) GG(0.679)

rs9640055

7

intronic

GLCCI1

GG(0.038) GA(0.344) AA(0.618)

rs2966712

7

intergenic

LOC285965

AA(0.005) AG(0.211) GG(0.784)

rs411102

9

intergenic

KRT8P11

GG(0.749) GA(0.242) AA(0.009)

rs7850541

9

intergenic

GBGT1

GG(0.514) GA(0.361) AA(0.125)

rs7081455

10

intergenic

PLXDC2

AA(0.644) AC(0.293) CC(0.063)

rs493622

11

intergenic

CHORDC1

AA(0.565) AC(0.383) CC(0.052)

rs610160

11

intronic

GRIA4

AA(0.693) AG(0.262) GG(0.045)

rs7961953

12

intronic

TMTC2

GG(0.522) GA(0.397) AA(0.081)

rs10492680

13

intergenic

FLJ42392

GG(0.005) GA(0.187) AA(0.808)

rs1571379

14

intergenic

SEL1L

AA(0.440) AG(0.454) GG(0.106)

rs9788983

17

intronic

RPH3AL

AA(0.770) AG(0.215) GG(0.015)

rs16940484

18

intronic

TTC39C

GG(0.469) GA(0.450) AA(0.081)

rs2864107

19

intergenic

ZNF175

GG(0.684) GA(0.301) AA(0.015)

rs6115865

20

intergenic

C20orf194

AA(0.125) AG(0.428) GG(0.447)

rs5765558

22

intergenic

ATXN10

AA(0.287) AG(0.478) GG(0.235)

  1. The dbSNP ID represents with build 130. Chr. denotes the number of chromosome. The Nearest genes are positioned nearest by each SNP and referred to NCBI Build 36. Genotype frequencies are calculated by total samples used in this study, which are 115 POAG patients and 94 healthy control volunteers.